(21 nodes) Protein kinase A regulatory subunit binding network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PJA2	Uncharacterized protein. (546 aa)
	WASF3	WASP family member 3. (547 aa)
	LOC102349535	Uncharacterized protein. (176 aa)
	ACBD3	Acyl-CoA binding domain containing 3. (525 aa)
	AKAP11	A-kinase anchoring protein 11. (1808 aa)
	SPATC1	Uncharacterized protein. (225 aa)
	EZR	Ezrin. (591 aa)
	H3AF01_LATCH	Uncharacterized protein. (658 aa)
	ARFGEF1	ADP ribosylation factor guanine nucleotide exchange factor 1. (1801 aa)
	H3AHJ4_LATCH	Ion_trans domain-containing protein; Belongs to the potassium channel family. (298 aa)
	KCNQ1	Potassium voltage-gated channel subfamily Q member 1; Belongs to the potassium channel family. (351 aa)
	AKAP8	A-kinase anchoring protein 8; Belongs to the AKAP95 family. (699 aa)
	LOC102362853	Si:ch73-362m14.4. (500 aa)
	AKAP6	Uncharacterized protein. (901 aa)
	AKAP7	A-kinase anchoring protein 7. (427 aa)
	PRRC1	Proline rich coiled-coil 1. (455 aa)
	H3B1J8_LATCH	AKAP7_NLS domain-containing protein. (240 aa)
	ARFGEF2	ADP ribosylation factor guanine nucleotide exchange factor 2. (1803 aa)
	WASF2	WASP family member 2. (503 aa)
	AKAP1	A-kinase anchoring protein 1. (874 aa)
	SPATC1L	Speriolin_C domain-containing protein. (362 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKAP1	AKAP11	ENSLACP00000019171	ENSLACP00000003269	A-kinase anchoring protein 1.	A-kinase anchoring protein 11.	0.547
AKAP1	AKAP6	ENSLACP00000019171	ENSLACP00000010706	A-kinase anchoring protein 1.	Uncharacterized protein.	0.442
AKAP1	AKAP7	ENSLACP00000019171	ENSLACP00000012688	A-kinase anchoring protein 1.	A-kinase anchoring protein 7.	0.442
AKAP1	AKAP8	ENSLACP00000019171	ENSLACP00000010312	A-kinase anchoring protein 1.	A-kinase anchoring protein 8; Belongs to the AKAP95 family.	0.556
AKAP1	H3AF01_LATCH	ENSLACP00000019171	ENSLACP00000008222	A-kinase anchoring protein 1.	Uncharacterized protein.	0.442
AKAP1	H3B1J8_LATCH	ENSLACP00000019171	ENSLACP00000015769	A-kinase anchoring protein 1.	AKAP7_NLS domain-containing protein.	0.442
AKAP11	AKAP1	ENSLACP00000003269	ENSLACP00000019171	A-kinase anchoring protein 11.	A-kinase anchoring protein 1.	0.547
AKAP11	AKAP7	ENSLACP00000003269	ENSLACP00000012688	A-kinase anchoring protein 11.	A-kinase anchoring protein 7.	0.614
AKAP11	AKAP8	ENSLACP00000003269	ENSLACP00000010312	A-kinase anchoring protein 11.	A-kinase anchoring protein 8; Belongs to the AKAP95 family.	0.710
AKAP6	AKAP1	ENSLACP00000010706	ENSLACP00000019171	Uncharacterized protein.	A-kinase anchoring protein 1.	0.442
AKAP6	H3AF01_LATCH	ENSLACP00000010706	ENSLACP00000008222	Uncharacterized protein.	Uncharacterized protein.	0.924
AKAP7	AKAP1	ENSLACP00000012688	ENSLACP00000019171	A-kinase anchoring protein 7.	A-kinase anchoring protein 1.	0.442
AKAP7	AKAP11	ENSLACP00000012688	ENSLACP00000003269	A-kinase anchoring protein 7.	A-kinase anchoring protein 11.	0.614
AKAP7	AKAP8	ENSLACP00000012688	ENSLACP00000010312	A-kinase anchoring protein 7.	A-kinase anchoring protein 8; Belongs to the AKAP95 family.	0.697
AKAP8	AKAP1	ENSLACP00000010312	ENSLACP00000019171	A-kinase anchoring protein 8; Belongs to the AKAP95 family.	A-kinase anchoring protein 1.	0.556
AKAP8	AKAP11	ENSLACP00000010312	ENSLACP00000003269	A-kinase anchoring protein 8; Belongs to the AKAP95 family.	A-kinase anchoring protein 11.	0.710
AKAP8	AKAP7	ENSLACP00000010312	ENSLACP00000012688	A-kinase anchoring protein 8; Belongs to the AKAP95 family.	A-kinase anchoring protein 7.	0.697
ARFGEF1	ARFGEF2	ENSLACP00000008489	ENSLACP00000017810	ADP ribosylation factor guanine nucleotide exchange factor 1.	ADP ribosylation factor guanine nucleotide exchange factor 2.	0.595
ARFGEF2	ARFGEF1	ENSLACP00000017810	ENSLACP00000008489	ADP ribosylation factor guanine nucleotide exchange factor 2.	ADP ribosylation factor guanine nucleotide exchange factor 1.	0.595
H3AF01_LATCH	AKAP1	ENSLACP00000008222	ENSLACP00000019171	Uncharacterized protein.	A-kinase anchoring protein 1.	0.442