6 items (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SQSTM1	Sequestosome 1. (441 aa)
	WDFY3	Uncharacterized protein. (854 aa)
	WDR81	WD repeat domain 81. (1916 aa)
	LOC102363169	Uncharacterized protein. (130 aa)
	MAP1LC3C	Microtubule associated protein 1 light chain 3 gamma. (142 aa)
	ATG5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG5	LOC102363169	ENSLACP00000015035	ENSLACP00000008047	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.733
ATG5	MAP1LC3C	ENSLACP00000015035	ENSLACP00000008845	Autophagy protein 5; Involved in autophagic vesicle formation.	Microtubule associated protein 1 light chain 3 gamma.	0.733
ATG5	SQSTM1	ENSLACP00000015035	ENSLACP00000013831	Autophagy protein 5; Involved in autophagic vesicle formation.	Sequestosome 1.	0.937
ATG5	WDFY3	ENSLACP00000015035	ENSLACP00000002987	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.720
ATG5	WDR81	ENSLACP00000015035	ENSLACP00000005168	Autophagy protein 5; Involved in autophagic vesicle formation.	WD repeat domain 81.	0.411
LOC102363169	ATG5	ENSLACP00000008047	ENSLACP00000015035	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.733
LOC102363169	SQSTM1	ENSLACP00000008047	ENSLACP00000013831	Uncharacterized protein.	Sequestosome 1.	0.741
LOC102363169	WDFY3	ENSLACP00000008047	ENSLACP00000002987	Uncharacterized protein.	Uncharacterized protein.	0.500
LOC102363169	WDR81	ENSLACP00000008047	ENSLACP00000005168	Uncharacterized protein.	WD repeat domain 81.	0.431
MAP1LC3C	ATG5	ENSLACP00000008845	ENSLACP00000015035	Microtubule associated protein 1 light chain 3 gamma.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.733
MAP1LC3C	SQSTM1	ENSLACP00000008845	ENSLACP00000013831	Microtubule associated protein 1 light chain 3 gamma.	Sequestosome 1.	0.741
MAP1LC3C	WDFY3	ENSLACP00000008845	ENSLACP00000002987	Microtubule associated protein 1 light chain 3 gamma.	Uncharacterized protein.	0.500
MAP1LC3C	WDR81	ENSLACP00000008845	ENSLACP00000005168	Microtubule associated protein 1 light chain 3 gamma.	WD repeat domain 81.	0.431
SQSTM1	ATG5	ENSLACP00000013831	ENSLACP00000015035	Sequestosome 1.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.937
SQSTM1	LOC102363169	ENSLACP00000013831	ENSLACP00000008047	Sequestosome 1.	Uncharacterized protein.	0.741
SQSTM1	MAP1LC3C	ENSLACP00000013831	ENSLACP00000008845	Sequestosome 1.	Microtubule associated protein 1 light chain 3 gamma.	0.741
SQSTM1	WDFY3	ENSLACP00000013831	ENSLACP00000002987	Sequestosome 1.	Uncharacterized protein.	0.825
WDFY3	ATG5	ENSLACP00000002987	ENSLACP00000015035	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.720
WDFY3	LOC102363169	ENSLACP00000002987	ENSLACP00000008047	Uncharacterized protein.	Uncharacterized protein.	0.500
WDFY3	MAP1LC3C	ENSLACP00000002987	ENSLACP00000008845	Uncharacterized protein.	Microtubule associated protein 1 light chain 3 gamma.	0.500