(18 nodes) Golgi to plasma membrane protein transport network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VAMP3	Vesicle associated membrane protein 3. (138 aa)
	GGA2	Uncharacterized protein. (641 aa)
	C16orf70	Chromosome 16 open reading frame 70. (411 aa)
	BBS2	Bardet-Biedl syndrome 2 protein homolog. (724 aa)
	BLZF1	Basic leucine zipper nuclear factor 1. (404 aa)
	SYS1	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)
	RAB31	RAB31, member RAS oncogene family. (195 aa)
	GGA1	Golgi associated, gamma adaptin ear containing, ARF binding protein 1. (609 aa)
	H3A6Z7_LATCH	Bardet-Biedl syndrome 1. (596 aa)
	GGA3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3. (736 aa)
	GOLPH3	Golgi phosphoprotein 3. (294 aa)
	ARFRP1	ADP ribosylation factor related protein 1. (121 aa)
	VAMP5	Vesicle associated membrane protein 5. (122 aa)
	PREPL	Prolyl endopeptidase like. (663 aa)
	AMN	Amnion associated transmembrane protein. (492 aa)
	GOLGA4	Golgin A4. (2330 aa)
	NSF	N-ethylmaleimide sensitive factor, vesicle fusing ATPase. (744 aa)
	GOLPH3L	Golgi phosphoprotein 3 like. (286 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARFRP1	GOLGA4	ENSLACP00000002205	ENSLACP00000011983	ADP ribosylation factor related protein 1.	Golgin A4.	0.569
ARFRP1	NSF	ENSLACP00000002205	ENSLACP00000009198	ADP ribosylation factor related protein 1.	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	0.662
ARFRP1	SYS1	ENSLACP00000002205	ENSLACP00000021059	ADP ribosylation factor related protein 1.	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.	0.943
BBS2	H3A6Z7_LATCH	ENSLACP00000017026	ENSLACP00000005418	Bardet-Biedl syndrome 2 protein homolog.	Bardet-Biedl syndrome 1.	0.998
GGA1	GGA3	ENSLACP00000007345	ENSLACP00000003686	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.417
GGA2	GGA3	ENSLACP00000014908	ENSLACP00000003686	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.424
GGA3	GGA1	ENSLACP00000003686	ENSLACP00000007345	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.417
GGA3	GGA2	ENSLACP00000003686	ENSLACP00000014908	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Uncharacterized protein.	0.424
GGA3	GOLPH3	ENSLACP00000003686	ENSLACP00000002732	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Golgi phosphoprotein 3.	0.430
GOLGA4	ARFRP1	ENSLACP00000011983	ENSLACP00000002205	Golgin A4.	ADP ribosylation factor related protein 1.	0.569
GOLGA4	NSF	ENSLACP00000011983	ENSLACP00000009198	Golgin A4.	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	0.421
GOLGA4	SYS1	ENSLACP00000011983	ENSLACP00000021059	Golgin A4.	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.	0.539
GOLPH3	GGA3	ENSLACP00000002732	ENSLACP00000003686	Golgi phosphoprotein 3.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.430
H3A6Z7_LATCH	BBS2	ENSLACP00000005418	ENSLACP00000017026	Bardet-Biedl syndrome 1.	Bardet-Biedl syndrome 2 protein homolog.	0.998
NSF	ARFRP1	ENSLACP00000009198	ENSLACP00000002205	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	ADP ribosylation factor related protein 1.	0.662
NSF	GOLGA4	ENSLACP00000009198	ENSLACP00000011983	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	Golgin A4.	0.421
NSF	SYS1	ENSLACP00000009198	ENSLACP00000021059	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.	0.592
NSF	VAMP3	ENSLACP00000009198	ENSLACP00000012238	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	Vesicle associated membrane protein 3.	0.883
NSF	VAMP5	ENSLACP00000009198	ENSLACP00000001992	N-ethylmaleimide sensitive factor, vesicle fusing ATPase.	Vesicle associated membrane protein 5.	0.784
SYS1	ARFRP1	ENSLACP00000021059	ENSLACP00000002205	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.	ADP ribosylation factor related protein 1.	0.943