STRINGSTRING
SMARCB1 SMARCB1 SP1 SP1 SNW1 SNW1 HPN HPN LOC102346889 LOC102346889 CCNT1 CCNT1 CHD1 CHD1 TFAP4 TFAP4 CTDP1 CTDP1 NUCKS1 NUCKS1 JUN JUN LEF1 LEF1 H3AD77_LATCH H3AD77_LATCH LOC102352539 LOC102352539
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMARCB1SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (384 aa)
SP1Sp1 transcription factor. (754 aa)
SNW1SNW domain containing 1. (536 aa)
HPNHepsin; Belongs to the peptidase S1 family. (415 aa)
LOC102346889Uncharacterized protein. (744 aa)
CCNT1Cyclin T1; Belongs to the cyclin family. (731 aa)
CHD1Chromodomain helicase DNA binding protein 1. (1788 aa)
TFAP4Transcription factor AP-4. (350 aa)
CTDP1RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (846 aa)
NUCKS1Nuclear casein kinase and cyclin dependent kinase substrate 1. (295 aa)
JUNJun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (311 aa)
LEF1Lymphoid enhancer binding factor 1. (397 aa)
H3AD77_LATCHJunE proto-oncogene, AP-1 transcription factor subunit. (316 aa)
LOC102352539Uncharacterized protein. (949 aa)
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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