(19 nodes) Sulfur compound catabolic process network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GGT7	Gamma-glutamyltransferase 7. (660 aa)
	H2ZSB5_LATCH	Hyaluronidase. (441 aa)
	IDUA	Uncharacterized protein. (137 aa)
	LOC102356817	Hyaluronidase. (485 aa)
	ACAT1	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family. (422 aa)
	CBS	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (563 aa)
	MTRR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase. (720 aa)
	CHAC2	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (203 aa)
	LOC102358666	Hyaluronidase. (443 aa)
	CHAC1	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (223 aa)
	MLYCD	Malonyl-CoA decarboxylase. (480 aa)
	FITM2	Fat storage inducing transmembrane protein 2. (266 aa)
	NUDT19	Nudix hydrolase 19. (388 aa)
	BLMH	Bleomycin hydrolase; Belongs to the peptidase C1 family. (454 aa)
	CDO1	Cysteine dioxygenase. (201 aa)
	GGT5	Gamma-glutamyltransferase 5a. (511 aa)
	LOC102347571	Uncharacterized protein. (226 aa)
	LOC102347571-2	Uncharacterized protein. (576 aa)
	ACOT7	Acyl-CoA thioesterase 7. (318 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACAT1	MLYCD	ENSLACP00000002727	ENSLACP00000014059	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Malonyl-CoA decarboxylase.	0.907
CBS	CDO1	ENSLACP00000007861	ENSLACP00000015921	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Cysteine dioxygenase.	0.583
CBS	MTRR	ENSLACP00000007861	ENSLACP00000008467	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	5-methyltetrahydrofolate-homocysteine methyltransferase reductase.	0.864
CDO1	CBS	ENSLACP00000015921	ENSLACP00000007861	Cysteine dioxygenase.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.583
CHAC1	GGT7	ENSLACP00000013183	ENSLACP00000021660	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Gamma-glutamyltransferase 7.	0.907
GGT5	GGT7	ENSLACP00000016353	ENSLACP00000021660	Gamma-glutamyltransferase 5a.	Gamma-glutamyltransferase 7.	0.731
GGT5	LOC102347571	ENSLACP00000016353	ENSLACP00000016517	Gamma-glutamyltransferase 5a.	Uncharacterized protein.	0.661
GGT5	LOC102347571-2	ENSLACP00000016353	ENSLACP00000016828	Gamma-glutamyltransferase 5a.	Uncharacterized protein.	0.656
GGT7	CHAC1	ENSLACP00000021660	ENSLACP00000013183	Gamma-glutamyltransferase 7.	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.907
GGT7	GGT5	ENSLACP00000021660	ENSLACP00000016353	Gamma-glutamyltransferase 7.	Gamma-glutamyltransferase 5a.	0.731
GGT7	LOC102347571	ENSLACP00000021660	ENSLACP00000016517	Gamma-glutamyltransferase 7.	Uncharacterized protein.	0.601
GGT7	LOC102347571-2	ENSLACP00000021660	ENSLACP00000016828	Gamma-glutamyltransferase 7.	Uncharacterized protein.	0.567
H2ZSB5_LATCH	IDUA	ENSLACP00000000286	ENSLACP00000001803	Hyaluronidase.	Uncharacterized protein.	0.911
IDUA	H2ZSB5_LATCH	ENSLACP00000001803	ENSLACP00000000286	Uncharacterized protein.	Hyaluronidase.	0.911
IDUA	LOC102356817	ENSLACP00000001803	ENSLACP00000002707	Uncharacterized protein.	Hyaluronidase.	0.911
IDUA	LOC102358666	ENSLACP00000001803	ENSLACP00000009305	Uncharacterized protein.	Hyaluronidase.	0.911
LOC102347571	GGT5	ENSLACP00000016517	ENSLACP00000016353	Uncharacterized protein.	Gamma-glutamyltransferase 5a.	0.661
LOC102347571	GGT7	ENSLACP00000016517	ENSLACP00000021660	Uncharacterized protein.	Gamma-glutamyltransferase 7.	0.601
LOC102347571-2	GGT5	ENSLACP00000016828	ENSLACP00000016353	Uncharacterized protein.	Gamma-glutamyltransferase 5a.	0.656
LOC102347571-2	GGT7	ENSLACP00000016828	ENSLACP00000021660	Uncharacterized protein.	Gamma-glutamyltransferase 7.	0.567