(11 nodes) Nuclear retinoid X receptor binding network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NSD1	Nuclear receptor binding SET domain protein 1. (2226 aa)
	NRIP1	Nuclear receptor interacting protein 1. (1186 aa)
	TACC1	Transforming acidic coiled-coil containing protein 1. (811 aa)
	NR0B2	Nuclear receptor subfamily 0 group B member 2. (260 aa)
	MED25	Mediator complex subunit 25. (663 aa)
	ARID5A	AT-rich interaction domain 5A. (583 aa)
	NR1H2	Nuclear receptor subfamily 1 group H member 2. (426 aa)
	NR1H4	Nuclear receptor subfamily 1 group H member 4. (456 aa)
	NR1H3	Nuclear receptor subfamily 1 group H member 3. (375 aa)
	NCOA6	Nuclear receptor coactivator 6. (2049 aa)
	VDR	Vitamin D receptor. (427 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NR0B2	NR1H2	ENSLACP00000013086	ENSLACP00000017222	Nuclear receptor subfamily 0 group B member 2.	Nuclear receptor subfamily 1 group H member 2.	0.455
NR0B2	NR1H3	ENSLACP00000013086	ENSLACP00000021584	Nuclear receptor subfamily 0 group B member 2.	Nuclear receptor subfamily 1 group H member 3.	0.455
NR0B2	NR1H4	ENSLACP00000013086	ENSLACP00000020088	Nuclear receptor subfamily 0 group B member 2.	Nuclear receptor subfamily 1 group H member 4.	0.782
NR1H2	NR0B2	ENSLACP00000017222	ENSLACP00000013086	Nuclear receptor subfamily 1 group H member 2.	Nuclear receptor subfamily 0 group B member 2.	0.455
NR1H3	NR0B2	ENSLACP00000021584	ENSLACP00000013086	Nuclear receptor subfamily 1 group H member 3.	Nuclear receptor subfamily 0 group B member 2.	0.455
NR1H4	NR0B2	ENSLACP00000020088	ENSLACP00000013086	Nuclear receptor subfamily 1 group H member 4.	Nuclear receptor subfamily 0 group B member 2.	0.782