19 items (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEC14L1	SEC14 like lipid binding 1. (719 aa)
	H3ASL3_LATCH	Si:ch211-203k16.3. (394 aa)
	DHX58	DExH-box helicase 58. (680 aa)
	GPATCH3	G-patch domain containing 3. (648 aa)
	TRAF3IP1	TRAF3 interacting protein 1. (709 aa)
	ATG5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	UFD1	Ubiquitin recognition factor in ER associated degradation 1. (302 aa)
	TSPAN6	Tetraspanin. (250 aa)
	H3B782_LATCH	Si:ch211-157b11.8. (221 aa)
	RNF26	Ring finger protein 26. (451 aa)
	ILRUN	Inflammation and lipid regulator with UBA-like and NBR1-like domains. (286 aa)
	RIOK3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (513 aa)
	ITCH	E3 ubiquitin-protein ligase. (880 aa)
	C1QBP	Complement C1q binding protein. (335 aa)
	MUL1	Mitochondrial E3 ubiquitin protein ligase 1. (352 aa)
	TKFC	Triokinase and FMN cyclase. (582 aa)
	NLRX1	NLR family member X1. (855 aa)
	ATG12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (145 aa)
	FGL2	Fibrinogen like 2. (441 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG12	ATG5	ENSLACP00000001446	ENSLACP00000015035	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.999
ATG12	DHX58	ENSLACP00000001446	ENSLACP00000012725	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	DExH-box helicase 58.	0.423
ATG12	ILRUN	ENSLACP00000001446	ENSLACP00000019175	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Inflammation and lipid regulator with UBA-like and NBR1-like domains.	0.424
ATG12	NLRX1	ENSLACP00000001446	ENSLACP00000020273	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	NLR family member X1.	0.551
ATG5	ATG12	ENSLACP00000015035	ENSLACP00000001446	Autophagy protein 5; Involved in autophagic vesicle formation.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.999
ATG5	DHX58	ENSLACP00000015035	ENSLACP00000012725	Autophagy protein 5; Involved in autophagic vesicle formation.	DExH-box helicase 58.	0.417
ATG5	ILRUN	ENSLACP00000015035	ENSLACP00000019175	Autophagy protein 5; Involved in autophagic vesicle formation.	Inflammation and lipid regulator with UBA-like and NBR1-like domains.	0.473
ATG5	NLRX1	ENSLACP00000015035	ENSLACP00000020273	Autophagy protein 5; Involved in autophagic vesicle formation.	NLR family member X1.	0.562
DHX58	ATG12	ENSLACP00000012725	ENSLACP00000001446	DExH-box helicase 58.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.423
DHX58	ATG5	ENSLACP00000012725	ENSLACP00000015035	DExH-box helicase 58.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.417
DHX58	TKFC	ENSLACP00000012725	ENSLACP00000019979	DExH-box helicase 58.	Triokinase and FMN cyclase.	0.459
ILRUN	ATG12	ENSLACP00000019175	ENSLACP00000001446	Inflammation and lipid regulator with UBA-like and NBR1-like domains.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.424
ILRUN	ATG5	ENSLACP00000019175	ENSLACP00000015035	Inflammation and lipid regulator with UBA-like and NBR1-like domains.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.473
NLRX1	ATG12	ENSLACP00000020273	ENSLACP00000001446	NLR family member X1.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.551
NLRX1	ATG5	ENSLACP00000020273	ENSLACP00000015035	NLR family member X1.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.562
TKFC	DHX58	ENSLACP00000019979	ENSLACP00000012725	Triokinase and FMN cyclase.	DExH-box helicase 58.	0.459