(13 nodes) Regulation of lipoprotein metabolic process network (Latimeria chalumnae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RABL3	RAB, member of RAS oncogene family like 3. (218 aa)
	ITGAV	Integrin_alpha2 domain-containing protein. (597 aa)
	RAB3GAP1	RAB3 GTPase activating protein catalytic subunit 1. (1006 aa)
	HHATL	Hedgehog acyltransferase like; Belongs to the membrane-bound acyltransferase family. (507 aa)
	APOD	Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (189 aa)
	GBA	Glucosylceramidase. (517 aa)
	TMEM130	Transmembrane protein 130. (417 aa)
	RB1CC1	RB1-inducible coiled-coil 1. (1296 aa)
	H3AM01_LATCH	Integrin beta; Belongs to the integrin beta chain family. (769 aa)
	H3AMM0_LATCH	ATG11 domain-containing protein. (241 aa)
	ATG101	Autophagy related 101. (218 aa)
	RAB3GAP2	RAB3 GTPase activating non-catalytic protein subunit 2. (1290 aa)
	ULK1	Unc-51 like autophagy activating kinase 1. (1046 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG101	H3AMM0_LATCH	ENSLACP00000014612	ENSLACP00000010891	Autophagy related 101.	ATG11 domain-containing protein.	0.922
ATG101	RB1CC1	ENSLACP00000014612	ENSLACP00000008546	Autophagy related 101.	RB1-inducible coiled-coil 1.	0.980
ATG101	ULK1	ENSLACP00000014612	ENSLACP00000021180	Autophagy related 101.	Unc-51 like autophagy activating kinase 1.	0.988
H3AM01_LATCH	ITGAV	ENSLACP00000010672	ENSLACP00000000513	Integrin beta; Belongs to the integrin beta chain family.	Integrin_alpha2 domain-containing protein.	0.998
H3AMM0_LATCH	ATG101	ENSLACP00000010891	ENSLACP00000014612	ATG11 domain-containing protein.	Autophagy related 101.	0.922
H3AMM0_LATCH	RB1CC1	ENSLACP00000010891	ENSLACP00000008546	ATG11 domain-containing protein.	RB1-inducible coiled-coil 1.	0.925
H3AMM0_LATCH	ULK1	ENSLACP00000010891	ENSLACP00000021180	ATG11 domain-containing protein.	Unc-51 like autophagy activating kinase 1.	0.925
ITGAV	H3AM01_LATCH	ENSLACP00000000513	ENSLACP00000010672	Integrin_alpha2 domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.998
RAB3GAP1	RAB3GAP2	ENSLACP00000004440	ENSLACP00000015004	RAB3 GTPase activating protein catalytic subunit 1.	RAB3 GTPase activating non-catalytic protein subunit 2.	0.999
RAB3GAP1	RABL3	ENSLACP00000004440	ENSLACP00000017306	RAB3 GTPase activating protein catalytic subunit 1.	RAB, member of RAS oncogene family like 3.	0.556
RAB3GAP2	RAB3GAP1	ENSLACP00000015004	ENSLACP00000004440	RAB3 GTPase activating non-catalytic protein subunit 2.	RAB3 GTPase activating protein catalytic subunit 1.	0.999
RABL3	RAB3GAP1	ENSLACP00000017306	ENSLACP00000004440	RAB, member of RAS oncogene family like 3.	RAB3 GTPase activating protein catalytic subunit 1.	0.556
RB1CC1	ATG101	ENSLACP00000008546	ENSLACP00000014612	RB1-inducible coiled-coil 1.	Autophagy related 101.	0.980
RB1CC1	H3AMM0_LATCH	ENSLACP00000008546	ENSLACP00000010891	RB1-inducible coiled-coil 1.	ATG11 domain-containing protein.	0.925
RB1CC1	ULK1	ENSLACP00000008546	ENSLACP00000021180	RB1-inducible coiled-coil 1.	Unc-51 like autophagy activating kinase 1.	0.998
ULK1	ATG101	ENSLACP00000021180	ENSLACP00000014612	Unc-51 like autophagy activating kinase 1.	Autophagy related 101.	0.988
ULK1	H3AMM0_LATCH	ENSLACP00000021180	ENSLACP00000010891	Unc-51 like autophagy activating kinase 1.	ATG11 domain-containing protein.	0.925
ULK1	RB1CC1	ENSLACP00000021180	ENSLACP00000008546	Unc-51 like autophagy activating kinase 1.	RB1-inducible coiled-coil 1.	0.998