(79 nodes) Detection of stimulus involved in sensory perception network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102345124	Taste receptor type 2. (318 aa)
	LOC102355825	Opsin 4xa; Belongs to the G-protein coupled receptor 1 family. (260 aa)
	PDZD7	PDZ domain containing 7. (505 aa)
	LOC102345612	Olfactory receptor. (315 aa)
	H2ZWJ8_LATCH	Taste receptor type 2. (278 aa)
	H2ZWN0_LATCH	Reverse transcriptase domain-containing protein. (142 aa)
	H2ZXG6_LATCH	Uncharacterized protein. (135 aa)
	H2ZXP3_LATCH	Uncharacterized protein. (173 aa)
	LOC102362379	G_PROTEIN_RECEP_F1_2 domain-containing protein. (319 aa)
	H2ZYB6_LATCH	Uncharacterized protein. (324 aa)
	LOC102364958	Olfactory receptor. (320 aa)
	PPEF2	Serine/threonine-protein phosphatase with EF-hands. (700 aa)
	LOC102366570	Olfactory receptor. (324 aa)
	LOC102351357	Olfactory receptor. (320 aa)
	LOC102346419	Olfactory receptor. (317 aa)
	TMC2	Transmembrane channel-like protein. (908 aa)
	KIT	KIT proto-oncogene, receptor tyrosine kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (937 aa)
	H3A478_LATCH	PDZ domain-containing protein. (297 aa)
	PJVK	Pejvakin. (355 aa)
	H3A624_LATCH	Uncharacterized protein. (591 aa)
	GNAT3	G protein subunit alpha transducin 3. (355 aa)
	SERPINE2	Serpin family E member 2; Belongs to the serpin family. (403 aa)
	LOC102361323	Peripherin 2-like a. (364 aa)
	LOC102367600	Olfactory receptor. (319 aa)
	LOC102366831	Olfactory receptor. (311 aa)
	H3A8D2_LATCH	G_PROTEIN_RECEP_F1_2 domain-containing protein. (365 aa)
	H3A900_LATCH	Uncharacterized protein. (166 aa)
	H3A992_LATCH	Olfactory receptor. (330 aa)
	LOC102367093	Olfactory receptor. (311 aa)
	H3A9U0_LATCH	PDZ domain-containing protein. (234 aa)
	H3AA55_LATCH	Uncharacterized protein. (329 aa)
	MKKS	McKusick-Kaufman syndrome. (575 aa)
	CRB1	Crumbs cell polarity complex component 1. (1366 aa)
	LOC102363837	Olfactory receptor. (340 aa)
	LOC102351278	Olfactory receptor. (308 aa)
	H3AG29_LATCH	Uncharacterized protein. (600 aa)
	REEP6	Receptor expression-enhancing protein. (202 aa)
	H3AH58_LATCH	Uncharacterized protein. (107 aa)
	H3AHJ4_LATCH	Ion_trans domain-containing protein; Belongs to the potassium channel family. (298 aa)
	OPN4	Opsin 4. (517 aa)
	LOC102345801	Olfactory receptor. (321 aa)
	H3AIG1_LATCH	Uncharacterized protein. (317 aa)
	PTPRQ	Protein tyrosine phosphatase receptor type Q. (1795 aa)
	H3AIN6_LATCH	G_PROTEIN_RECEP_F1_2 domain-containing protein. (345 aa)
	LOC102347675	Vomeronasal 2, receptor 1. (913 aa)
	KCNQ1	Potassium voltage-gated channel subfamily Q member 1; Belongs to the potassium channel family. (351 aa)
	ADGRV1	Adhesion G protein-coupled receptor V1. (5847 aa)
	H3AKA2_LATCH	G_PROTEIN_RECEP_F1_2 domain-containing protein. (333 aa)
	H3AKY8_LATCH	Uncharacterized protein. (620 aa)
	LOC102346831	G_PROTEIN_RECEP_F1_2 domain-containing protein. (322 aa)
	GPRC6A	G protein-coupled receptor class C group 6 member A. (916 aa)
	RGS9BP	Regulator of G protein signaling 9 binding protein. (237 aa)
	GNAT1	G protein subunit alpha transducin 1. (321 aa)
	PPEF1	Serine/threonine-protein phosphatase with EF-hands. (732 aa)
	H3ATU7_LATCH	zf-3CxxC domain-containing protein. (200 aa)
	H3AY29_LATCH	Uncharacterized protein. (534 aa)
	PRPH2	Peripherin 2. (350 aa)
	CACNB4	Calcium channel, voltage-dependent, beta 4a subunit. (477 aa)
	TRPA1	Transient receptor potential cation channel subfamily A member 1; Belongs to the transient receptor (TC 1.A.4) family. (1138 aa)
	RHO	Rhodopsin. (355 aa)
	LOC102349476	G_PROTEIN_RECEP_F1_2 domain-containing protein. (325 aa)
	HPN	Hepsin; Belongs to the peptidase S1 family. (415 aa)
	CA6	Carbonic anhydrase 6; Belongs to the alpha-carbonic anhydrase family. (522 aa)
	H3B8L7_LATCH	Reverse transcriptase domain-containing protein. (526 aa)
	LOC102347432	Rhodopsin. (355 aa)
	TAS1R1	Taste 1 receptor member 1. (843 aa)
	GPR148	G_PROTEIN_RECEP_F1_2 domain-containing protein. (306 aa)
	KCNK4	Potassium two pore domain channel subfamily K member 4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (444 aa)
	H3BCB5_LATCH	Uncharacterized protein. (307 aa)
	PKD2L1	Polycystin 2 like 1, transient receptor potential cation channel. (741 aa)
	H3BD69_LATCH	G_PROTEIN_RECEP_F1_2 domain-containing protein. (279 aa)
	PRDM12	PR domain zinc finger protein 12; Involved in the positive regulation of histone H3-K9 dimethylation; Belongs to the class V-like SAM-binding methyltransferase superfamily. (354 aa)
	GNAT2	G protein subunit alpha transducin 2. (333 aa)
	CPTP-2	G_PROTEIN_RECEP_F3_4 domain-containing protein. (841 aa)
	LOC102355338	G_PROTEIN_RECEP_F3_4 domain-containing protein. (842 aa)
	H3BHP6_LATCH	G_PROTEIN_RECEP_F3_4 domain-containing protein. (840 aa)
	CRB2	Uncharacterized protein. (1473 aa)
	MMP24	Matrix metallopeptidase 24. (608 aa)
	TAS1R3	Taste 1 receptor member 3. (838 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRV1	H3A478_LATCH	ENSLACP00000010057	ENSLACP00000004449	Adhesion G protein-coupled receptor V1.	PDZ domain-containing protein.	0.543
ADGRV1	H3A9U0_LATCH	ENSLACP00000010057	ENSLACP00000006411	Adhesion G protein-coupled receptor V1.	PDZ domain-containing protein.	0.530
ADGRV1	H3AIG1_LATCH	ENSLACP00000010057	ENSLACP00000009432	Adhesion G protein-coupled receptor V1.	Uncharacterized protein.	0.543
ADGRV1	PDZD7	ENSLACP00000010057	ENSLACP00000000972	Adhesion G protein-coupled receptor V1.	PDZ domain containing 7.	0.873
ADGRV1	TMC2	ENSLACP00000010057	ENSLACP00000004291	Adhesion G protein-coupled receptor V1.	Transmembrane channel-like protein.	0.431
GNAT1	LOC102347432	ENSLACP00000012249	ENSLACP00000018849	G protein subunit alpha transducin 1.	Rhodopsin.	0.983
GNAT1	LOC102355825	ENSLACP00000012249	ENSLACP00000000781	G protein subunit alpha transducin 1.	Opsin 4xa; Belongs to the G-protein coupled receptor 1 family.	0.442
GNAT1	OPN4	ENSLACP00000012249	ENSLACP00000009186	G protein subunit alpha transducin 1.	Opsin 4.	0.442
GNAT1	RGS9BP	ENSLACP00000012249	ENSLACP00000011820	G protein subunit alpha transducin 1.	Regulator of G protein signaling 9 binding protein.	0.402
GNAT1	RHO	ENSLACP00000012249	ENSLACP00000014823	G protein subunit alpha transducin 1.	Rhodopsin.	0.984
GNAT1	TAS1R1	ENSLACP00000012249	ENSLACP00000019055	G protein subunit alpha transducin 1.	Taste 1 receptor member 1.	0.404
GNAT2	LOC102347432	ENSLACP00000020256	ENSLACP00000018849	G protein subunit alpha transducin 2.	Rhodopsin.	0.881
GNAT2	LOC102355825	ENSLACP00000020256	ENSLACP00000000781	G protein subunit alpha transducin 2.	Opsin 4xa; Belongs to the G-protein coupled receptor 1 family.	0.442
GNAT2	LOC102361323	ENSLACP00000020256	ENSLACP00000005362	G protein subunit alpha transducin 2.	Peripherin 2-like a.	0.567
GNAT2	OPN4	ENSLACP00000020256	ENSLACP00000009186	G protein subunit alpha transducin 2.	Opsin 4.	0.442
GNAT2	PRPH2	ENSLACP00000020256	ENSLACP00000014556	G protein subunit alpha transducin 2.	Peripherin 2.	0.569
GNAT2	RGS9BP	ENSLACP00000020256	ENSLACP00000011820	G protein subunit alpha transducin 2.	Regulator of G protein signaling 9 binding protein.	0.402
GNAT2	RHO	ENSLACP00000020256	ENSLACP00000014823	G protein subunit alpha transducin 2.	Rhodopsin.	0.871
GNAT3	LOC102347432	ENSLACP00000005214	ENSLACP00000018849	G protein subunit alpha transducin 3.	Rhodopsin.	0.753
GNAT3	LOC102355825	ENSLACP00000005214	ENSLACP00000000781	G protein subunit alpha transducin 3.	Opsin 4xa; Belongs to the G-protein coupled receptor 1 family.	0.442