(22 nodes) Positive regulation of glycogen metabolic process network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3AFG3_LATCH	Dimer_Tnp_hAT domain-containing protein. (202 aa)
	H3AFH7_LATCH	Uncharacterized protein. (364 aa)
	H3AFI1_LATCH	Uncharacterized protein. (241 aa)
	H3APJ3_LATCH	Dimer_Tnp_hAT domain-containing protein. (226 aa)
	H3ARI5_LATCH	Uncharacterized protein. (417 aa)
	H3ASZ0_LATCH	Uncharacterized protein. (205 aa)
	H3AV95_LATCH	DUF4371 domain-containing protein. (559 aa)
	H3AWY0_LATCH	Uncharacterized protein. (559 aa)
	H3AZ56_LATCH	Dimer_Tnp_hAT domain-containing protein. (458 aa)
	H3B6H7_LATCH	Dimer_Tnp_hAT domain-containing protein. (246 aa)
	H3B749_LATCH	Uncharacterized protein. (360 aa)
	H3BBU7_LATCH	Uncharacterized protein. (127 aa)
	H3A6C6_LATCH	Dimer_Tnp_hAT domain-containing protein. (210 aa)
	IGF2	Insulin like growth factor 2. (207 aa)
	H3A536_LATCH	Uncharacterized protein. (167 aa)
	H3A113_LATCH	Dimer_Tnp_hAT domain-containing protein. (167 aa)
	H3A0C4_LATCH	Uncharacterized protein. (204 aa)
	H3BFB7_LATCH	Uncharacterized protein. (489 aa)
	H2ZZS8_LATCH	Uncharacterized protein. (346 aa)
	H2ZY15_LATCH	Uncharacterized protein. (481 aa)
	H2ZWP1_LATCH	Dimer_Tnp_hAT domain-containing protein. (525 aa)
	H3BGZ2_LATCH	Uncharacterized protein. (176 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZZS8_LATCH	H3A0C4_LATCH	ENSLACP00000002899	ENSLACP00000003095	Uncharacterized protein.	Uncharacterized protein.	0.486
H2ZZS8_LATCH	H3BBU7_LATCH	ENSLACP00000002899	ENSLACP00000019368	Uncharacterized protein.	Uncharacterized protein.	0.480
H3A0C4_LATCH	H2ZZS8_LATCH	ENSLACP00000003095	ENSLACP00000002899	Uncharacterized protein.	Uncharacterized protein.	0.486
H3A0C4_LATCH	H3AFH7_LATCH	ENSLACP00000003095	ENSLACP00000008398	Uncharacterized protein.	Uncharacterized protein.	0.501
H3A0C4_LATCH	H3AZ56_LATCH	ENSLACP00000003095	ENSLACP00000014927	Uncharacterized protein.	Dimer_Tnp_hAT domain-containing protein.	0.437
H3A0C4_LATCH	H3BBU7_LATCH	ENSLACP00000003095	ENSLACP00000019368	Uncharacterized protein.	Uncharacterized protein.	0.458
H3A0C4_LATCH	H3BGZ2_LATCH	ENSLACP00000003095	ENSLACP00000021163	Uncharacterized protein.	Uncharacterized protein.	0.490
H3A113_LATCH	H3BGZ2_LATCH	ENSLACP00000003334	ENSLACP00000021163	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.444
H3A536_LATCH	H3AFI1_LATCH	ENSLACP00000004757	ENSLACP00000008402	Uncharacterized protein.	Uncharacterized protein.	0.470
H3A536_LATCH	H3B749_LATCH	ENSLACP00000004757	ENSLACP00000017720	Uncharacterized protein.	Uncharacterized protein.	0.461
H3A536_LATCH	H3BGZ2_LATCH	ENSLACP00000004757	ENSLACP00000021163	Uncharacterized protein.	Uncharacterized protein.	0.509
H3A6C6_LATCH	H3B749_LATCH	ENSLACP00000005197	ENSLACP00000017720	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.418
H3A6C6_LATCH	H3BGZ2_LATCH	ENSLACP00000005197	ENSLACP00000021163	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.479
H3AFG3_LATCH	H3AFI1_LATCH	ENSLACP00000008384	ENSLACP00000008402	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.447
H3AFG3_LATCH	H3B749_LATCH	ENSLACP00000008384	ENSLACP00000017720	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.456
H3AFG3_LATCH	H3BGZ2_LATCH	ENSLACP00000008384	ENSLACP00000021163	Dimer_Tnp_hAT domain-containing protein.	Uncharacterized protein.	0.511
H3AFH7_LATCH	H3A0C4_LATCH	ENSLACP00000008398	ENSLACP00000003095	Uncharacterized protein.	Uncharacterized protein.	0.501
H3AFH7_LATCH	H3BBU7_LATCH	ENSLACP00000008398	ENSLACP00000019368	Uncharacterized protein.	Uncharacterized protein.	0.444
H3AFI1_LATCH	H3A536_LATCH	ENSLACP00000008402	ENSLACP00000004757	Uncharacterized protein.	Uncharacterized protein.	0.470
H3AFI1_LATCH	H3AFG3_LATCH	ENSLACP00000008402	ENSLACP00000008384	Uncharacterized protein.	Dimer_Tnp_hAT domain-containing protein.	0.447