(13 nodes) 14-3-3 protein binding network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RIPOR3	RIPOR family member 3. (850 aa)
	RPTOR	Regulatory associated protein of MTOR complex 1. (1334 aa)
	RBM7	RRM domain-containing protein. (270 aa)
	DDIT4	DNA damage inducible transcript 4. (222 aa)
	H3AZY7_LATCH	Kelch-like family member 22. (628 aa)
	TBC1D22A	TBC1 domain family member 22A. (513 aa)
	PI4KB	Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family. (786 aa)
	TMCC3	Transmembrane and coiled-coil domain family 3. (480 aa)
	DDIT4L	DNA damage inducible transcript 4 like. (187 aa)
	RIPOR2	RHO family interacting cell polarization regulator 2. (1059 aa)
	RIPOR1	RHO family interacting cell polarization regulator 1. (1071 aa)
	H3ACA4_LATCH	Ig-like domain-containing protein. (156 aa)
	TBC1D22B	TBC1 domain family member 22B. (506 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDIT4	RPTOR	ENSLACP00000019932	ENSLACP00000023161	DNA damage inducible transcript 4.	Regulatory associated protein of MTOR complex 1.	0.459
DDIT4L	RPTOR	ENSLACP00000004852	ENSLACP00000023161	DNA damage inducible transcript 4 like.	Regulatory associated protein of MTOR complex 1.	0.424
PI4KB	TBC1D22A	ENSLACP00000004421	ENSLACP00000003461	Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.	TBC1 domain family member 22A.	0.435
RPTOR	DDIT4	ENSLACP00000023161	ENSLACP00000019932	Regulatory associated protein of MTOR complex 1.	DNA damage inducible transcript 4.	0.459
RPTOR	DDIT4L	ENSLACP00000023161	ENSLACP00000004852	Regulatory associated protein of MTOR complex 1.	DNA damage inducible transcript 4 like.	0.424
TBC1D22A	PI4KB	ENSLACP00000003461	ENSLACP00000004421	TBC1 domain family member 22A.	Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.	0.435