(20 nodes) Phagosome maturation network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB14	RAB14, member RAS oncogene family. (234 aa)
	RAB38	RAB38b, member of RAS oncogene family. (112 aa)
	LOC102356101	Uncharacterized protein. (213 aa)
	CLN3	Battenin. (406 aa)
	RAB31	RAB31, member RAS oncogene family. (195 aa)
	LOC102352152	Uncharacterized protein. (206 aa)
	MREG	Uncharacterized protein. (186 aa)
	SYT7	Synaptotagmin 7. (286 aa)
	LOC102360588	Uncharacterized protein. (214 aa)
	RAB20	RAB20, member RAS oncogene family. (235 aa)
	TMEM175	Transmembrane protein 175. (511 aa)
	SPG11	SPG11 vesicle trafficking associated, spatacsin. (2438 aa)
	RAB38-2	RAB38b, member of RAS oncogene family. (79 aa)
	PIKFYVE	Phosphoinositide kinase, FYVE-type zinc finger containing. (2113 aa)
	RAB7B	RAB7B, member RAS oncogene family. (201 aa)
	H3B2K8_LATCH	Uncharacterized protein. (159 aa)
	RAB7A	RAB7A, member RAS oncogene family. (207 aa)
	LOC102366418	Zgc:91968. (232 aa)
	SRPX	Sushi repeat containing protein X-linked. (410 aa)
	RAB32	Uncharacterized protein. (174 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3B2K8_LATCH	PIKFYVE	ENSLACP00000016129	ENSLACP00000015707	Uncharacterized protein.	Phosphoinositide kinase, FYVE-type zinc finger containing.	0.418
H3B2K8_LATCH	RAB20	ENSLACP00000016129	ENSLACP00000012485	Uncharacterized protein.	RAB20, member RAS oncogene family.	0.452
H3B2K8_LATCH	RAB31	ENSLACP00000016129	ENSLACP00000008305	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.452
LOC102352152	RAB14	ENSLACP00000009995	ENSLACP00000012691	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.431
LOC102352152	RAB7A	ENSLACP00000009995	ENSLACP00000017899	Uncharacterized protein.	RAB7A, member RAS oncogene family.	0.900
LOC102352152	RAB7B	ENSLACP00000009995	ENSLACP00000016038	Uncharacterized protein.	RAB7B, member RAS oncogene family.	0.965
PIKFYVE	H3B2K8_LATCH	ENSLACP00000015707	ENSLACP00000016129	Phosphoinositide kinase, FYVE-type zinc finger containing.	Uncharacterized protein.	0.418
RAB14	LOC102352152	ENSLACP00000012691	ENSLACP00000009995	RAB14, member RAS oncogene family.	Uncharacterized protein.	0.431
RAB14	RAB20	ENSLACP00000012691	ENSLACP00000012485	RAB14, member RAS oncogene family.	RAB20, member RAS oncogene family.	0.490
RAB14	RAB31	ENSLACP00000012691	ENSLACP00000008305	RAB14, member RAS oncogene family.	RAB31, member RAS oncogene family.	0.526
RAB14	RAB7A	ENSLACP00000012691	ENSLACP00000017899	RAB14, member RAS oncogene family.	RAB7A, member RAS oncogene family.	0.429
RAB20	H3B2K8_LATCH	ENSLACP00000012485	ENSLACP00000016129	RAB20, member RAS oncogene family.	Uncharacterized protein.	0.452
RAB20	RAB14	ENSLACP00000012485	ENSLACP00000012691	RAB20, member RAS oncogene family.	RAB14, member RAS oncogene family.	0.490
RAB20	RAB7B	ENSLACP00000012485	ENSLACP00000016038	RAB20, member RAS oncogene family.	RAB7B, member RAS oncogene family.	0.449
RAB31	H3B2K8_LATCH	ENSLACP00000008305	ENSLACP00000016129	RAB31, member RAS oncogene family.	Uncharacterized protein.	0.452
RAB31	RAB14	ENSLACP00000008305	ENSLACP00000012691	RAB31, member RAS oncogene family.	RAB14, member RAS oncogene family.	0.526
RAB31	RAB7B	ENSLACP00000008305	ENSLACP00000016038	RAB31, member RAS oncogene family.	RAB7B, member RAS oncogene family.	0.470
RAB7A	LOC102352152	ENSLACP00000017899	ENSLACP00000009995	RAB7A, member RAS oncogene family.	Uncharacterized protein.	0.900
RAB7A	RAB14	ENSLACP00000017899	ENSLACP00000012691	RAB7A, member RAS oncogene family.	RAB14, member RAS oncogene family.	0.429
RAB7A	RAB7B	ENSLACP00000017899	ENSLACP00000016038	RAB7A, member RAS oncogene family.	RAB7B, member RAS oncogene family.	0.984