(8 nodes) Periciliary membrane compartment network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3A478_LATCH	PDZ domain-containing protein. (297 aa)
	H3A4S8_LATCH	Uncharacterized protein. (2030 aa)
	RP2	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (354 aa)
	KIFAP3	Kinesin associated protein 3. (795 aa)
	H3AIG1_LATCH	Uncharacterized protein. (317 aa)
	ADGRV1	Adhesion G protein-coupled receptor V1. (5847 aa)
	LOC102350991	Uncharacterized protein. (1471 aa)
	KIF17	Kinesin family member 17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1042 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRV1	H3A478_LATCH	ENSLACP00000010057	ENSLACP00000004449	Adhesion G protein-coupled receptor V1.	PDZ domain-containing protein.	0.543
ADGRV1	H3A4S8_LATCH	ENSLACP00000010057	ENSLACP00000004649	Adhesion G protein-coupled receptor V1.	Uncharacterized protein.	0.535
ADGRV1	H3AIG1_LATCH	ENSLACP00000010057	ENSLACP00000009432	Adhesion G protein-coupled receptor V1.	Uncharacterized protein.	0.543
ADGRV1	LOC102350991	ENSLACP00000010057	ENSLACP00000012767	Adhesion G protein-coupled receptor V1.	Uncharacterized protein.	0.755
H3A478_LATCH	ADGRV1	ENSLACP00000004449	ENSLACP00000010057	PDZ domain-containing protein.	Adhesion G protein-coupled receptor V1.	0.543
H3A478_LATCH	H3A4S8_LATCH	ENSLACP00000004449	ENSLACP00000004649	PDZ domain-containing protein.	Uncharacterized protein.	0.448
H3A478_LATCH	H3AIG1_LATCH	ENSLACP00000004449	ENSLACP00000009432	PDZ domain-containing protein.	Uncharacterized protein.	0.899
H3A478_LATCH	LOC102350991	ENSLACP00000004449	ENSLACP00000012767	PDZ domain-containing protein.	Uncharacterized protein.	0.448
H3A4S8_LATCH	ADGRV1	ENSLACP00000004649	ENSLACP00000010057	Uncharacterized protein.	Adhesion G protein-coupled receptor V1.	0.535
H3A4S8_LATCH	H3A478_LATCH	ENSLACP00000004649	ENSLACP00000004449	Uncharacterized protein.	PDZ domain-containing protein.	0.448
H3A4S8_LATCH	H3AIG1_LATCH	ENSLACP00000004649	ENSLACP00000009432	Uncharacterized protein.	Uncharacterized protein.	0.448
H3AIG1_LATCH	ADGRV1	ENSLACP00000009432	ENSLACP00000010057	Uncharacterized protein.	Adhesion G protein-coupled receptor V1.	0.543
H3AIG1_LATCH	H3A478_LATCH	ENSLACP00000009432	ENSLACP00000004449	Uncharacterized protein.	PDZ domain-containing protein.	0.899
H3AIG1_LATCH	H3A4S8_LATCH	ENSLACP00000009432	ENSLACP00000004649	Uncharacterized protein.	Uncharacterized protein.	0.448
H3AIG1_LATCH	LOC102350991	ENSLACP00000009432	ENSLACP00000012767	Uncharacterized protein.	Uncharacterized protein.	0.448
KIF17	KIFAP3	ENSLACP00000020454	ENSLACP00000006219	Kinesin family member 17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin associated protein 3.	0.797
KIFAP3	KIF17	ENSLACP00000006219	ENSLACP00000020454	Kinesin associated protein 3.	Kinesin family member 17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.797
LOC102350991	ADGRV1	ENSLACP00000012767	ENSLACP00000010057	Uncharacterized protein.	Adhesion G protein-coupled receptor V1.	0.755
LOC102350991	H3A478_LATCH	ENSLACP00000012767	ENSLACP00000004449	Uncharacterized protein.	PDZ domain-containing protein.	0.448
LOC102350991	H3AIG1_LATCH	ENSLACP00000012767	ENSLACP00000009432	Uncharacterized protein.	Uncharacterized protein.	0.448