(5 nodes) Glycocalyx network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3AJV8_LATCH	Beta_helix domain-containing protein. (504 aa)
	PKHD1L1	PKHD1 like 1. (4001 aa)
	LOC102347595	Uncharacterized protein. (331 aa)
	H3AIX4_LATCH	Uncharacterized protein. (418 aa)
	H3AM41_LATCH	G8 domain-containing protein. (1861 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3AIX4_LATCH	H3AJV8_LATCH	ENSLACP00000009595	ENSLACP00000009929	Uncharacterized protein.	Beta_helix domain-containing protein.	0.621
H3AIX4_LATCH	H3AM41_LATCH	ENSLACP00000009595	ENSLACP00000010712	Uncharacterized protein.	G8 domain-containing protein.	0.934
H3AJV8_LATCH	H3AIX4_LATCH	ENSLACP00000009929	ENSLACP00000009595	Beta_helix domain-containing protein.	Uncharacterized protein.	0.621
H3AJV8_LATCH	H3AM41_LATCH	ENSLACP00000009929	ENSLACP00000010712	Beta_helix domain-containing protein.	G8 domain-containing protein.	0.899
H3AM41_LATCH	H3AIX4_LATCH	ENSLACP00000010712	ENSLACP00000009595	G8 domain-containing protein.	Uncharacterized protein.	0.934
H3AM41_LATCH	H3AJV8_LATCH	ENSLACP00000010712	ENSLACP00000009929	G8 domain-containing protein.	Beta_helix domain-containing protein.	0.899