(6 nodes) BLOC-3 complex network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB38-2	RAB38b, member of RAS oncogene family. (79 aa)
	RAB38	RAB38b, member of RAS oncogene family. (112 aa)
	HPS1	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1. (699 aa)
	HPS4	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2. (720 aa)
	LOC102360588	Uncharacterized protein. (214 aa)
	RAB32	Uncharacterized protein. (174 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HPS1	HPS4	ENSLACP00000008599	ENSLACP00000009839	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	0.992
HPS1	LOC102360588	ENSLACP00000008599	ENSLACP00000012385	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	Uncharacterized protein.	0.508
HPS1	RAB32	ENSLACP00000008599	ENSLACP00000023562	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	Uncharacterized protein.	0.508
HPS1	RAB38	ENSLACP00000008599	ENSLACP00000000658	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	RAB38b, member of RAS oncogene family.	0.508
HPS1	RAB38-2	ENSLACP00000008599	ENSLACP00000014829	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	RAB38b, member of RAS oncogene family.	0.508
HPS4	HPS1	ENSLACP00000009839	ENSLACP00000008599	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	0.992
HPS4	LOC102360588	ENSLACP00000009839	ENSLACP00000012385	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	Uncharacterized protein.	0.482
HPS4	RAB32	ENSLACP00000009839	ENSLACP00000023562	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	Uncharacterized protein.	0.482
HPS4	RAB38	ENSLACP00000009839	ENSLACP00000000658	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	RAB38b, member of RAS oncogene family.	0.482
HPS4	RAB38-2	ENSLACP00000009839	ENSLACP00000014829	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	RAB38b, member of RAS oncogene family.	0.482
LOC102360588	HPS1	ENSLACP00000012385	ENSLACP00000008599	Uncharacterized protein.	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	0.508
LOC102360588	HPS4	ENSLACP00000012385	ENSLACP00000009839	Uncharacterized protein.	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	0.482
RAB32	HPS1	ENSLACP00000023562	ENSLACP00000008599	Uncharacterized protein.	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	0.508
RAB32	HPS4	ENSLACP00000023562	ENSLACP00000009839	Uncharacterized protein.	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	0.482
RAB38	HPS1	ENSLACP00000000658	ENSLACP00000008599	RAB38b, member of RAS oncogene family.	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	0.508
RAB38	HPS4	ENSLACP00000000658	ENSLACP00000009839	RAB38b, member of RAS oncogene family.	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	0.482
RAB38-2	HPS1	ENSLACP00000014829	ENSLACP00000008599	RAB38b, member of RAS oncogene family.	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	0.508
RAB38-2	HPS4	ENSLACP00000014829	ENSLACP00000009839	RAB38b, member of RAS oncogene family.	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	0.482