(10 nodes) Nuclear translocator network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARNTL	Aryl hydrocarbon receptor nuclear translocator like. (635 aa)
	ARNT2	Uncharacterized protein. (206 aa)
	ARNTL2	Aryl hydrocarbon receptor nuclear translocator like 2. (553 aa)
	ARNT2-2	Aryl-hydrocarbon receptor nuclear translocator 2. (430 aa)
	NPAS2	Neuronal PAS domain protein 2. (818 aa)
	CLOCK	Clock circadian regulator. (846 aa)
	ARNT	Aryl hydrocarbon receptor nuclear translocator. (801 aa)
	SIM1	SIM bHLH transcription factor 1. (460 aa)
	PASD1	Uncharacterized protein. (770 aa)
	LOC102354477	Uncharacterized protein. (838 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNT	LOC102354477	ENSLACP00000015797	ENSLACP00000020262	Aryl hydrocarbon receptor nuclear translocator.	Uncharacterized protein.	0.805
ARNT	SIM1	ENSLACP00000015797	ENSLACP00000018073	Aryl hydrocarbon receptor nuclear translocator.	SIM bHLH transcription factor 1.	0.649
ARNT2	ARNT2-2	ENSLACP00000010079	ENSLACP00000011352	Uncharacterized protein.	Aryl-hydrocarbon receptor nuclear translocator 2.	0.900
ARNT2	CLOCK	ENSLACP00000010079	ENSLACP00000015264	Uncharacterized protein.	Clock circadian regulator.	0.513
ARNT2	LOC102354477	ENSLACP00000010079	ENSLACP00000020262	Uncharacterized protein.	Uncharacterized protein.	0.805
ARNT2	SIM1	ENSLACP00000010079	ENSLACP00000018073	Uncharacterized protein.	SIM bHLH transcription factor 1.	0.825
ARNT2-2	ARNT2	ENSLACP00000011352	ENSLACP00000010079	Aryl-hydrocarbon receptor nuclear translocator 2.	Uncharacterized protein.	0.900
ARNT2-2	CLOCK	ENSLACP00000011352	ENSLACP00000015264	Aryl-hydrocarbon receptor nuclear translocator 2.	Clock circadian regulator.	0.533
ARNT2-2	LOC102354477	ENSLACP00000011352	ENSLACP00000020262	Aryl-hydrocarbon receptor nuclear translocator 2.	Uncharacterized protein.	0.805
ARNT2-2	SIM1	ENSLACP00000011352	ENSLACP00000018073	Aryl-hydrocarbon receptor nuclear translocator 2.	SIM bHLH transcription factor 1.	0.839
ARNTL	ARNTL2	ENSLACP00000005211	ENSLACP00000010964	Aryl hydrocarbon receptor nuclear translocator like.	Aryl hydrocarbon receptor nuclear translocator like 2.	0.605
ARNTL	CLOCK	ENSLACP00000005211	ENSLACP00000015264	Aryl hydrocarbon receptor nuclear translocator like.	Clock circadian regulator.	0.945
ARNTL	LOC102354477	ENSLACP00000005211	ENSLACP00000020262	Aryl hydrocarbon receptor nuclear translocator like.	Uncharacterized protein.	0.614
ARNTL	NPAS2	ENSLACP00000005211	ENSLACP00000013444	Aryl hydrocarbon receptor nuclear translocator like.	Neuronal PAS domain protein 2.	0.940
ARNTL	PASD1	ENSLACP00000005211	ENSLACP00000018464	Aryl hydrocarbon receptor nuclear translocator like.	Uncharacterized protein.	0.833
ARNTL	SIM1	ENSLACP00000005211	ENSLACP00000018073	Aryl hydrocarbon receptor nuclear translocator like.	SIM bHLH transcription factor 1.	0.404
ARNTL2	ARNTL	ENSLACP00000010964	ENSLACP00000005211	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor nuclear translocator like.	0.605
ARNTL2	CLOCK	ENSLACP00000010964	ENSLACP00000015264	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator.	0.853
ARNTL2	LOC102354477	ENSLACP00000010964	ENSLACP00000020262	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.504
ARNTL2	NPAS2	ENSLACP00000010964	ENSLACP00000013444	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 2.	0.851