24 items (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102362583	Phosphodiesterase. (865 aa)
	PDE1A	Phosphodiesterase. (543 aa)
	PDE8A	Phosphodiesterase. (808 aa)
	PDE4D	Phosphodiesterase. (578 aa)
	PDE6C	Phosphodiesterase. (838 aa)
	LOC102360622	Phosphodiesterase. (504 aa)
	PDE4B	Phosphodiesterase. (667 aa)
	PDE8B	Phosphodiesterase. (778 aa)
	PDE3A	Phosphodiesterase. (817 aa)
	H3B0V9_LATCH	Phosphodiesterase. (538 aa)
	PDE6A	Phosphodiesterase. (862 aa)
	PDE11A	Phosphodiesterase. (574 aa)
	PDE9A	Phosphodiesterase. (519 aa)
	PDE3B	Phosphodiesterase. (1104 aa)
	PDE7B	Phosphodiesterase. (421 aa)
	H3ALJ8_LATCH	PDEase domain-containing protein. (155 aa)
	PDE1C	Phosphodiesterase. (440 aa)
	PDE2A	Phosphodiesterase. (705 aa)
	PDE5A	Phosphodiesterase. (722 aa)
	H3A7M4_LATCH	Phosphodiesterase. (663 aa)
	H3A551_LATCH	Phosphodiesterase. (437 aa)
	LOC102354234	Phosphodiesterase. (711 aa)
	PDE1B	Phosphodiesterase. (469 aa)
	PDE7A	Phosphodiesterase. (421 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3A551_LATCH	PDE8A	ENSLACP00000004772	ENSLACP00000022711	Phosphodiesterase.	Phosphodiesterase.	0.401
H3A551_LATCH	PDE8B	ENSLACP00000004772	ENSLACP00000016344	Phosphodiesterase.	Phosphodiesterase.	0.401
H3A7M4_LATCH	H3ALJ8_LATCH	ENSLACP00000005645	ENSLACP00000010519	Phosphodiesterase.	PDEase domain-containing protein.	0.574
H3A7M4_LATCH	PDE1A	ENSLACP00000005645	ENSLACP00000023092	Phosphodiesterase.	Phosphodiesterase.	0.417
H3A7M4_LATCH	PDE1B	ENSLACP00000005645	ENSLACP00000004645	Phosphodiesterase.	Phosphodiesterase.	0.417
H3A7M4_LATCH	PDE1C	ENSLACP00000005645	ENSLACP00000010319	Phosphodiesterase.	Phosphodiesterase.	0.417
H3ALJ8_LATCH	H3A7M4_LATCH	ENSLACP00000010519	ENSLACP00000005645	PDEase domain-containing protein.	Phosphodiesterase.	0.574
H3ALJ8_LATCH	PDE1A	ENSLACP00000010519	ENSLACP00000023092	PDEase domain-containing protein.	Phosphodiesterase.	0.417
H3ALJ8_LATCH	PDE1B	ENSLACP00000010519	ENSLACP00000004645	PDEase domain-containing protein.	Phosphodiesterase.	0.417
H3ALJ8_LATCH	PDE1C	ENSLACP00000010519	ENSLACP00000010319	PDEase domain-containing protein.	Phosphodiesterase.	0.417
H3ALJ8_LATCH	PDE5A	ENSLACP00000010519	ENSLACP00000006010	PDEase domain-containing protein.	Phosphodiesterase.	0.538
H3ALJ8_LATCH	PDE6A	ENSLACP00000010519	ENSLACP00000013636	PDEase domain-containing protein.	Phosphodiesterase.	0.900
H3B0V9_LATCH	PDE8A	ENSLACP00000015530	ENSLACP00000022711	Phosphodiesterase.	Phosphodiesterase.	0.401
H3B0V9_LATCH	PDE8B	ENSLACP00000015530	ENSLACP00000016344	Phosphodiesterase.	Phosphodiesterase.	0.401
LOC102354234	PDE8A	ENSLACP00000004691	ENSLACP00000022711	Phosphodiesterase.	Phosphodiesterase.	0.401
LOC102354234	PDE8B	ENSLACP00000004691	ENSLACP00000016344	Phosphodiesterase.	Phosphodiesterase.	0.401
LOC102360622	PDE5A	ENSLACP00000016760	ENSLACP00000006010	Phosphodiesterase.	Phosphodiesterase.	0.429
LOC102360622	PDE8A	ENSLACP00000016760	ENSLACP00000022711	Phosphodiesterase.	Phosphodiesterase.	0.401
LOC102360622	PDE8B	ENSLACP00000016760	ENSLACP00000016344	Phosphodiesterase.	Phosphodiesterase.	0.401
LOC102362583	PDE1A	ENSLACP00000003652	ENSLACP00000023092	Phosphodiesterase.	Phosphodiesterase.	0.417