(11 nodes) Zinc-binding ribosomal protein network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS27L	40S ribosomal protein S27. (84 aa)
	H3B4H4_LATCH	Uncharacterized protein. (96 aa)
	RPL36AL	Ribosomal protein L36a like; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	MRPL33	Mitochondrial ribosomal protein L33. (65 aa)
	RPL37	Ribosomal protein L37; Binds to the 23S rRNA. (96 aa)
	LOC102350907	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	RPS27A	Ribosomal protein S27a. (156 aa)
	RPS27	40S ribosomal protein S27. (84 aa)
	KXD1	Ubiquitin-like domain-containing protein. (231 aa)
	RPL37A	Ribosomal protein L37a. (92 aa)
	MRPL32	Mitochondrial ribosomal protein L32. (179 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3B4H4_LATCH	KXD1	ENSLACP00000016795	ENSLACP00000009213	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.953
H3B4H4_LATCH	LOC102350907	ENSLACP00000016795	ENSLACP00000003879	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.953
H3B4H4_LATCH	RPL36AL	ENSLACP00000016795	ENSLACP00000019698	Uncharacterized protein.	Ribosomal protein L36a like; Belongs to the eukaryotic ribosomal protein eL42 family.	0.994
H3B4H4_LATCH	RPL37A	ENSLACP00000016795	ENSLACP00000013146	Uncharacterized protein.	Ribosomal protein L37a.	0.989
H3B4H4_LATCH	RPS27	ENSLACP00000016795	ENSLACP00000008947	Uncharacterized protein.	40S ribosomal protein S27.	0.952
H3B4H4_LATCH	RPS27A	ENSLACP00000016795	ENSLACP00000008678	Uncharacterized protein.	Ribosomal protein S27a.	0.988
H3B4H4_LATCH	RPS27L	ENSLACP00000016795	ENSLACP00000014383	Uncharacterized protein.	40S ribosomal protein S27.	0.952
KXD1	H3B4H4_LATCH	ENSLACP00000009213	ENSLACP00000016795	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.953
KXD1	RPL36AL	ENSLACP00000009213	ENSLACP00000019698	Ubiquitin-like domain-containing protein.	Ribosomal protein L36a like; Belongs to the eukaryotic ribosomal protein eL42 family.	0.993
KXD1	RPL37	ENSLACP00000009213	ENSLACP00000003111	Ubiquitin-like domain-containing protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.953
KXD1	RPL37A	ENSLACP00000009213	ENSLACP00000013146	Ubiquitin-like domain-containing protein.	Ribosomal protein L37a.	0.988
KXD1	RPS27	ENSLACP00000009213	ENSLACP00000008947	Ubiquitin-like domain-containing protein.	40S ribosomal protein S27.	0.976
KXD1	RPS27A	ENSLACP00000009213	ENSLACP00000008678	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.999
KXD1	RPS27L	ENSLACP00000009213	ENSLACP00000014383	Ubiquitin-like domain-containing protein.	40S ribosomal protein S27.	0.976
LOC102350907	H3B4H4_LATCH	ENSLACP00000003879	ENSLACP00000016795	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.953
LOC102350907	RPL36AL	ENSLACP00000003879	ENSLACP00000019698	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein L36a like; Belongs to the eukaryotic ribosomal protein eL42 family.	0.993
LOC102350907	RPL37	ENSLACP00000003879	ENSLACP00000003111	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein L37; Binds to the 23S rRNA.	0.953
LOC102350907	RPL37A	ENSLACP00000003879	ENSLACP00000013146	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein L37a.	0.988
LOC102350907	RPS27	ENSLACP00000003879	ENSLACP00000008947	Ubiquitin A-52 residue ribosomal protein fusion product 1.	40S ribosomal protein S27.	0.976
LOC102350907	RPS27A	ENSLACP00000003879	ENSLACP00000008678	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.994