(20 nodes) Xenobiotics network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2ZTF8_LATCH	BHLH domain-containing protein. (84 aa)
	H2ZZF1_LATCH	PAS domain-containing protein. (1038 aa)
	AHR	Aryl hydrocarbon receptor 1a. (868 aa)
	H3A246_LATCH	Uncharacterized protein. (920 aa)
	LOC102357335	Uncharacterized protein; Belongs to the cytochrome P450 family. (334 aa)
	LOC102346667	Uncharacterized protein; Belongs to the cytochrome P450 family. (497 aa)
	ARNT2	Uncharacterized protein. (206 aa)
	LOC102362530	Uncharacterized protein; Belongs to the cytochrome P450 family. (540 aa)
	ARNT2-2	Aryl-hydrocarbon receptor nuclear translocator 2. (430 aa)
	H3APN0_LATCH	Uncharacterized protein; Belongs to the cytochrome P450 family. (491 aa)
	AHRR	PAS domain-containing protein. (653 aa)
	LOC102350971	Uncharacterized protein; Belongs to the cytochrome P450 family. (504 aa)
	LOC102347380	Cytochrome P450, family 1, subfamily D, polypeptide 1; Belongs to the cytochrome P450 family. (520 aa)
	H3AT94_LATCH	Uncharacterized protein; Belongs to the cytochrome P450 family. (381 aa)
	H3AXK3_LATCH	BHLH domain-containing protein. (73 aa)
	ARNT	Aryl hydrocarbon receptor nuclear translocator. (801 aa)
	LOC102357693	Cytochrome P450, family 1, subfamily A; Belongs to the cytochrome P450 family. (520 aa)
	H3B8W8_LATCH	Uncharacterized protein; Belongs to the cytochrome P450 family. (214 aa)
	H3BH94_LATCH	PAS domain-containing protein. (733 aa)
	LOC102365730	Uncharacterized protein; Belongs to the cytochrome P450 family. (503 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHR	ARNT	ENSLACP00000003128	ENSLACP00000015797	Aryl hydrocarbon receptor 1a.	Aryl hydrocarbon receptor nuclear translocator.	0.786
AHR	ARNT2	ENSLACP00000003128	ENSLACP00000010079	Aryl hydrocarbon receptor 1a.	Uncharacterized protein.	0.815
AHR	ARNT2-2	ENSLACP00000003128	ENSLACP00000011352	Aryl hydrocarbon receptor 1a.	Aryl-hydrocarbon receptor nuclear translocator 2.	0.917
AHR	LOC102357693	ENSLACP00000003128	ENSLACP00000015914	Aryl hydrocarbon receptor 1a.	Cytochrome P450, family 1, subfamily A; Belongs to the cytochrome P450 family.	0.721
AHRR	ARNT	ENSLACP00000011667	ENSLACP00000015797	PAS domain-containing protein.	Aryl hydrocarbon receptor nuclear translocator.	0.745
AHRR	ARNT2	ENSLACP00000011667	ENSLACP00000010079	PAS domain-containing protein.	Uncharacterized protein.	0.745
AHRR	ARNT2-2	ENSLACP00000011667	ENSLACP00000011352	PAS domain-containing protein.	Aryl-hydrocarbon receptor nuclear translocator 2.	0.745
AHRR	LOC102357693	ENSLACP00000011667	ENSLACP00000015914	PAS domain-containing protein.	Cytochrome P450, family 1, subfamily A; Belongs to the cytochrome P450 family.	0.585
ARNT	AHR	ENSLACP00000015797	ENSLACP00000003128	Aryl hydrocarbon receptor nuclear translocator.	Aryl hydrocarbon receptor 1a.	0.786
ARNT	AHRR	ENSLACP00000015797	ENSLACP00000011667	Aryl hydrocarbon receptor nuclear translocator.	PAS domain-containing protein.	0.745
ARNT	H2ZTF8_LATCH	ENSLACP00000015797	ENSLACP00000000679	Aryl hydrocarbon receptor nuclear translocator.	BHLH domain-containing protein.	0.516
ARNT	H2ZZF1_LATCH	ENSLACP00000015797	ENSLACP00000002772	Aryl hydrocarbon receptor nuclear translocator.	PAS domain-containing protein.	0.761
ARNT	H3A246_LATCH	ENSLACP00000015797	ENSLACP00000003717	Aryl hydrocarbon receptor nuclear translocator.	Uncharacterized protein.	0.761
ARNT	H3AXK3_LATCH	ENSLACP00000015797	ENSLACP00000014374	Aryl hydrocarbon receptor nuclear translocator.	BHLH domain-containing protein.	0.755
ARNT	H3BH94_LATCH	ENSLACP00000015797	ENSLACP00000021265	Aryl hydrocarbon receptor nuclear translocator.	PAS domain-containing protein.	0.761
ARNT	LOC102347380	ENSLACP00000015797	ENSLACP00000012796	Aryl hydrocarbon receptor nuclear translocator.	Cytochrome P450, family 1, subfamily D, polypeptide 1; Belongs to the cytochrome P450 family.	0.475
ARNT	LOC102357693	ENSLACP00000015797	ENSLACP00000015914	Aryl hydrocarbon receptor nuclear translocator.	Cytochrome P450, family 1, subfamily A; Belongs to the cytochrome P450 family.	0.440
ARNT2	AHR	ENSLACP00000010079	ENSLACP00000003128	Uncharacterized protein.	Aryl hydrocarbon receptor 1a.	0.815
ARNT2	AHRR	ENSLACP00000010079	ENSLACP00000011667	Uncharacterized protein.	PAS domain-containing protein.	0.745
ARNT2	ARNT2-2	ENSLACP00000010079	ENSLACP00000011352	Uncharacterized protein.	Aryl-hydrocarbon receptor nuclear translocator 2.	0.900