STRINGSTRING
LOC102347432 LOC102347432 LOC102355825 LOC102355825 RRH RRH LOC102349946 LOC102349946 OPN4 OPN4 OPN3 OPN3 LOC102357108 LOC102357108 RHO RHO RGR RGR OPN5 OPN5 LOC102349202 LOC102349202
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102347432Rhodopsin. (355 aa)
LOC102355825Opsin 4xa; Belongs to the G-protein coupled receptor 1 family. (260 aa)
RRHRetinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family. (383 aa)
LOC102349946G_PROTEIN_RECEP_F1_2 domain-containing protein. (361 aa)
OPN4Opsin 4. (517 aa)
OPN3Opsin 3; Belongs to the G-protein coupled receptor 1 family. (155 aa)
LOC102357108Opsin 1 (cone pigments), short-wave-sensitive 2. (360 aa)
RHORhodopsin. (355 aa)
RGRRetinal G protein coupled receptor; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (295 aa)
OPN5Opsin 5; Belongs to the G-protein coupled receptor 1 family. (290 aa)
LOC102349202Vertebrate ancient long opsin b. (322 aa)
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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