STRINGSTRING
TDP1 TDP1 M3XL87_LATCH M3XL87_LATCH M3XL57_LATCH M3XL57_LATCH MEIOB MEIOB M3XK14_LATCH M3XK14_LATCH M3XK07_LATCH M3XK07_LATCH LOC102365863 LOC102365863 POLE3 POLE3 EME1 EME1 BARD1 BARD1 RHNO1 RHNO1 RAD9B RAD9B M3XGI0_LATCH M3XGI0_LATCH TIMELESS TIMELESS CDK2 CDK2 ATRIP ATRIP EXD2 EXD2 RFC2 RFC2 BAP1 BAP1 RAD52 RAD52 RAD51AP1 RAD51AP1 UBXN1 UBXN1 RFC4 RFC4 RBBP8 RBBP8 H3BDB3_LATCH H3BDB3_LATCH POLE4 POLE4 RAD51B RAD51B PARP3 PARP3 POLE POLE RAD51 RAD51 EXO1 EXO1 RFC5 RFC5 H3BAV2_LATCH H3BAV2_LATCH CHEK1 CHEK1 POLE2 POLE2 SLC23A3 SLC23A3 CNPPD1 CNPPD1 SLF1 SLF1 EYA1 EYA1 POLD1 POLD1 SPIDR SPIDR BRCC3 BRCC3 GEN1 GEN1 KPNA2 KPNA2 LOC102350007 LOC102350007 PRKDC PRKDC TP53 TP53 H3B1Z1_LATCH H3B1Z1_LATCH DNA2 DNA2 PPP4R2 PPP4R2 POLD2 POLD2 KPNA7 KPNA7 SLX4 SLX4 EME2 EME2 H3AZT0_LATCH H3AZT0_LATCH H3AYY3_LATCH H3AYY3_LATCH APBB2 APBB2 MUS81 MUS81 H3AWE1_LATCH H3AWE1_LATCH XRCC4 XRCC4 PWWP2A PWWP2A ABRAXAS1 ABRAXAS1 POLH POLH TMEM182 TMEM182 PIAS4 PIAS4 POLD4 POLD4 NSD2 NSD2 RCBTB1 RCBTB1 XRCC6 XRCC6 RAD17 RAD17 H2BE1 H2BE1 H3APN8_LATCH H3APN8_LATCH ANKRD11 ANKRD11 RFC3 RFC3 ATR ATR LOC102360939 LOC102360939 BABAM1 BABAM1 RAD9A RAD9A H3ALL9_LATCH H3ALL9_LATCH POLD3 POLD3 RPA3 RPA3 H3AKN8_LATCH H3AKN8_LATCH SIRT7 SIRT7 TOP3A TOP3A TDP2 TDP2 H3AK44_LATCH H3AK44_LATCH XRCC3 XRCC3 TP53BP1 TP53BP1 H3AIY4_LATCH H3AIY4_LATCH NBN NBN LOC102367082 LOC102367082 KXD1 KXD1 TIPIN TIPIN SIRT6 SIRT6 H3AGP4_LATCH H3AGP4_LATCH LOC102358613 LOC102358613 LOC102367189 LOC102367189 LOC102347040 LOC102347040 RPS27A RPS27A H3AFK9_LATCH H3AFK9_LATCH CCNA1 CCNA1 H3AF58_LATCH H3AF58_LATCH UBE2N UBE2N UIMC1 UIMC1 H3AEU7_LATCH H3AEU7_LATCH RPA1 RPA1 H3AE13_LATCH H3AE13_LATCH RAD1 RAD1 PPP4C PPP4C RMI2 RMI2 BLM BLM H3AC16_LATCH H3AC16_LATCH H3ABS6_LATCH H3ABS6_LATCH RNF8 RNF8 H3ABB9_LATCH H3ABB9_LATCH XRCC5 XRCC5 HUS1 HUS1 BRCA1 BRCA1 PCNA PCNA PAXIP1 PAXIP1 LOC102355250 LOC102355250 NHEJ1 NHEJ1 TOPBP1 TOPBP1 RIF1 RIF1 RMI1 RMI1 H3A8P8_LATCH H3A8P8_LATCH H3A8A9_LATCH H3A8A9_LATCH POLK POLK EYA3 EYA3 ANKRD12 ANKRD12 ATM ATM H3A5V3_LATCH H3A5V3_LATCH H4C11 H4C11 H3A5E7_LATCH H3A5E7_LATCH APBB1 APBB1 H3A560_LATCH H3A560_LATCH MRE11 MRE11 PARP2 PARP2 RCBTB2 RCBTB2 H3A4B2_LATCH H3A4B2_LATCH EYA4 EYA4 LOC102361505 LOC102361505 H3A427_LATCH H3A427_LATCH H3A2S8_LATCH H3A2S8_LATCH LOC102350907 LOC102350907 XRCC2 XRCC2 LIG4 LIG4 LOC102346166 LOC102346166 RFC1 RFC1 PARP1 PARP1 RNF169 RNF169 CDCA7 CDCA7 H2ZZP4_LATCH H2ZZP4_LATCH EYA2 EYA2 UBE2V2 UBE2V2 H2ZXR2_LATCH H2ZXR2_LATCH DNTT DNTT PALB2 PALB2 H2ZWI5_LATCH H2ZWI5_LATCH FEN1 FEN1 TDRD3 TDRD3 H2ZVL4_LATCH H2ZVL4_LATCH POLL POLL CCNA2 CCNA2 H2ZTC3_LATCH H2ZTC3_LATCH H2ZS42_LATCH H2ZS42_LATCH H2ZS39_LATCH H2ZS39_LATCH RAD51C RAD51C DCLRE1C DCLRE1C CHEK2 CHEK2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TDP1Tyrosyl-DNA phosphodiesterase 1. (614 aa)
M3XL87_LATCHUncharacterized protein. (157 aa)
M3XL57_LATCHReverse transcriptase domain-containing protein. (332 aa)
MEIOBMeiosis specific with OB-fold. (470 aa)
M3XK14_LATCHUncharacterized protein. (196 aa)
M3XK07_LATCHUncharacterized protein. (251 aa)
LOC102365863UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
POLE3Polymerase (DNA directed), epsilon 3 (p17 subunit). (170 aa)
EME1Essential meiotic structure-specific endonuclease 1. (609 aa)
BARD1BRCA1 associated RING domain 1. (866 aa)
RHNO1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (319 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (411 aa)
M3XGI0_LATCHUncharacterized protein. (117 aa)
TIMELESSTimeless circadian regulator. (1272 aa)
CDK2Cyclin dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
ATRIPATR interacting protein. (782 aa)
EXD2Exonuclease 3'-5' domain containing 2. (617 aa)
RFC2Replication factor C subunit 2. (396 aa)
BAP1BRCA1 associated protein 1. (721 aa)
RAD52RAD52 homolog, DNA repair protein. (389 aa)
RAD51AP1RAD51 associated protein 1. (341 aa)
UBXN1UBX domain protein 1. (320 aa)
RFC4Replication factor C subunit 4. (360 aa)
RBBP8RB binding protein 8, endonuclease. (906 aa)
H3BDB3_LATCHUncharacterized protein. (402 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (133 aa)
RAD51BRAD51 paralog B. (250 aa)
PARP3Poly [ADP-ribose] polymerase. (525 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2289 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (341 aa)
EXO1Exonuclease 1. (805 aa)
RFC5Replication factor C subunit 5. (333 aa)
H3BAV2_LATCHUncharacterized protein. (105 aa)
CHEK1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (475 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (531 aa)
SLC23A3Solute carrier family 23 member 3. (584 aa)
CNPPD1Cyclin Pas1/PHO80 domain containing 1. (454 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1063 aa)
EYA1Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (646 aa)
POLD1DNA polymerase. (1103 aa)
SPIDRDUF4503 domain-containing protein. (397 aa)
BRCC3BRCA1/BRCA2-containing complex subunit 3. (291 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (899 aa)
KPNA2Importin subunit alpha; Belongs to the importin alpha family. (517 aa)
LOC102350007Small ubiquitin-related modifier. (100 aa)
PRKDCProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4083 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (401 aa)
H3B1Z1_LATCHUncharacterized protein. (352 aa)
DNA2DNA replication helicase/nuclease 2. (925 aa)
PPP4R2Protein phosphatase 4, regulatory subunit 2b. (410 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
KPNA7Importin subunit alpha; Belongs to the importin alpha family. (521 aa)
SLX4BTB domain-containing protein. (1393 aa)
EME2Essential meiotic structure-specific endonuclease subunit 2. (299 aa)
H3AZT0_LATCHUncharacterized protein. (114 aa)
H3AYY3_LATCHUncharacterized protein. (223 aa)
APBB2Amyloid beta precursor protein binding family B member 2. (745 aa)
MUS81Uncharacterized protein. (421 aa)
H3AWE1_LATCHUncharacterized protein. (135 aa)
XRCC4X-ray repair cross complementing 4. (331 aa)
PWWP2APWWP domain containing 2A. (843 aa)
ABRAXAS1Abraxas 1, BRCA1 A complex subunit. (412 aa)
POLHDNA polymerase eta. (729 aa)
TMEM182Transmembrane protein 182. (242 aa)
PIAS4Protein inhibitor of activated STAT 4. (370 aa)
POLD4Uncharacterized protein. (122 aa)
NSD2Nuclear receptor binding SET domain protein 2. (1348 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
XRCC6X-ray repair cross complementing 6. (610 aa)
RAD17RAD17 checkpoint clamp loader component. (748 aa)
H2BE1Histone H2B; Belongs to the histone H2B family. (122 aa)
H3APN8_LATCHReverse transcriptase domain-containing protein. (202 aa)
ANKRD11Ankyrin repeat domain 11. (2717 aa)
RFC3Replication factor C subunit 3. (237 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2654 aa)
LOC102360939XRCC1_N domain-containing protein. (206 aa)
BABAM1BRISC and BRCA1 A complex member 1. (323 aa)
RAD9AUncharacterized protein. (273 aa)
H3ALL9_LATCHUncharacterized protein. (251 aa)
POLD3Uncharacterized protein. (373 aa)
RPA3Replication protein A3. (121 aa)
H3AKN8_LATCHUncharacterized protein. (129 aa)
SIRT7Sirtuin 7. (413 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (999 aa)
TDP2Tyrosyl-DNA phosphodiesterase 2. (366 aa)
H3AK44_LATCHHistone domain-containing protein; Belongs to the histone H2B family. (105 aa)
XRCC3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (358 aa)
TP53BP1Tumor protein p53 binding protein 1. (2149 aa)
H3AIY4_LATCHUncharacterized protein. (161 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (772 aa)
LOC102367082XPGI domain-containing protein. (317 aa)
KXD1Ubiquitin-like domain-containing protein. (231 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (293 aa)
SIRT6Sirtuin 6. (375 aa)
H3AGP4_LATCHTower domain-containing protein. (1245 aa)
LOC102358613Uncharacterized protein. (249 aa)
LOC102367189Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (342 aa)
LOC102347040Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
RPS27ARibosomal protein S27a. (156 aa)
H3AFK9_LATCHRING-type domain-containing protein. (482 aa)
CCNA1Cyclin A1; Belongs to the cyclin family. (433 aa)
H3AF58_LATCHUncharacterized protein. (251 aa)
UBE2NUbiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family. (159 aa)
UIMC1Ubiquitin interaction motif containing 1. (735 aa)
H3AEU7_LATCHUncharacterized protein. (261 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (495 aa)
H3AE13_LATCHUncharacterized protein. (380 aa)
RAD1RAD1 checkpoint DNA exonuclease. (281 aa)
PPP4CSerine/threonine-protein phosphatase. (224 aa)
RMI2RecQ mediated genome instability 2. (158 aa)
BLMBLM RecQ like helicase. (1450 aa)
H3AC16_LATCHX-ray repair complementing defective repair in Chinese hamster cells 1. (649 aa)
H3ABS6_LATCHUncharacterized protein. (443 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (542 aa)
H3ABB9_LATCHWW domain-containing protein. (127 aa)
XRCC5X-ray repair cross complementing 5. (606 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (225 aa)
BRCA1BRCA1 DNA repair associated. (1873 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
PAXIP1PAX interacting protein 1. (1219 aa)
LOC102355250Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (264 aa)
NHEJ1Uncharacterized protein. (303 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1542 aa)
RIF1Replication timing regulatory factor 1. (2351 aa)
RMI1RecQ mediated genome instability 1. (616 aa)
H3A8P8_LATCHDUF4502 domain-containing protein. (165 aa)
H3A8A9_LATCHUncharacterized protein. (271 aa)
POLKDNA polymerase kappa. (873 aa)
EYA3Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (593 aa)
ANKRD12Ankyrin repeat domain 12. (2105 aa)
ATMATM serine/threonine kinase. (2375 aa)
H3A5V3_LATCHRecQ helicase-like 4. (1456 aa)
H4C11Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
H3A5E7_LATCHHistone H2B; Belongs to the histone H2B family. (130 aa)
APBB1Uncharacterized protein. (241 aa)
H3A560_LATCHRAD50 homolog, double strand break repair protein. (1193 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (710 aa)
PARP2Poly [ADP-ribose] polymerase. (502 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (413 aa)
H3A4B2_LATCHReverse transcriptase domain-containing protein. (787 aa)
EYA4Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (620 aa)
LOC102361505Histone H2B; Belongs to the histone H2B family. (126 aa)
H3A427_LATCHHistone H2B; Belongs to the histone H2B family. (137 aa)
H3A2S8_LATCHHistone H2B; Belongs to the histone H2B family. (138 aa)
LOC102350907Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
XRCC2X-ray repair cross complementing 2. (282 aa)
LIG4DNA ligase. (911 aa)
LOC102346166Ubiquitin-like domain-containing protein. (95 aa)
RFC1Replication factor C subunit 1. (1152 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1011 aa)
RNF169Ring finger protein 169. (684 aa)
CDCA7Cell division cycle associated 7. (405 aa)
H2ZZP4_LATCHHistone H2B; Belongs to the histone H2B family. (138 aa)
EYA2Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (579 aa)
UBE2V2Ubiquitin conjugating enzyme E2 V2. (55 aa)
H2ZXR2_LATCHLigase III, DNA, ATP-dependent; Belongs to the ATP-dependent DNA ligase family. (960 aa)
DNTTDNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family. (487 aa)
PALB2PALB2_WD40 domain-containing protein. (874 aa)
H2ZWI5_LATCHUncharacterized protein. (1469 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (317 aa)
TDRD3Tudor domain containing 3. (746 aa)
H2ZVL4_LATCHHistone domain-containing protein; Belongs to the histone H2B family. (90 aa)
POLLDNA polymerase lambda; Belongs to the DNA polymerase type-X family. (572 aa)
CCNA2Cyclin A2; Belongs to the cyclin family. (447 aa)
H2ZTC3_LATCHPARP-type domain-containing protein. (108 aa)
H2ZS42_LATCHAAA_23 domain-containing protein. (88 aa)
H2ZS39_LATCHHistone H2B; Belongs to the histone H2B family. (135 aa)
RAD51CRAD51 paralog C. (368 aa)
DCLRE1CDNA cross-link repair 1C. (539 aa)
CHEK2Checkpoint kinase 2. (411 aa)
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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