STRINGSTRING
TIPIN TIPIN RAD51C RAD51C H2ZS39_LATCH H2ZS39_LATCH H2ZS42_LATCH H2ZS42_LATCH CCNA2 CCNA2 H2ZVL4_LATCH H2ZVL4_LATCH TDRD3 TDRD3 H2ZWI5_LATCH H2ZWI5_LATCH PALB2 PALB2 UBE2V2 UBE2V2 H2ZZP4_LATCH H2ZZP4_LATCH CDCA7 CDCA7 RNF169 RNF169 RFC1 RFC1 LOC102346166 LOC102346166 XRCC2 XRCC2 LOC102350907 LOC102350907 H3A2S8_LATCH H3A2S8_LATCH H3A427_LATCH H3A427_LATCH LOC102361505 LOC102361505 H3A4B2_LATCH H3A4B2_LATCH RCBTB2 RCBTB2 MRE11 MRE11 H3A560_LATCH H3A560_LATCH H3A5E7_LATCH H3A5E7_LATCH H4C11 H4C11 H3A5V3_LATCH H3A5V3_LATCH ATM ATM ANKRD12 ANKRD12 POLK POLK H3A8A9_LATCH H3A8A9_LATCH H3A8P8_LATCH H3A8P8_LATCH RMI1 RMI1 TOPBP1 TOPBP1 LOC102355250 LOC102355250 PCNA PCNA BRCA1 BRCA1 HUS1 HUS1 RNF8 RNF8 H3ABS6_LATCH H3ABS6_LATCH BLM BLM RMI2 RMI2 PPP4C PPP4C RAD1 RAD1 H3AE13_LATCH H3AE13_LATCH RPA1 RPA1 UIMC1 UIMC1 UBE2N UBE2N H3AF58_LATCH H3AF58_LATCH CCNA1 CCNA1 H3AFK9_LATCH H3AFK9_LATCH RPS27A RPS27A LOC102347040 LOC102347040 LOC102367189 LOC102367189 H3AGP4_LATCH H3AGP4_LATCH SIRT6 SIRT6 KXD1 KXD1 NBN NBN H3AIY4_LATCH H3AIY4_LATCH TP53BP1 TP53BP1 XRCC3 XRCC3 H3AK44_LATCH H3AK44_LATCH TOP3A TOP3A SIRT7 SIRT7 H3AKN8_LATCH H3AKN8_LATCH RPA3 RPA3 POLD3 POLD3 H3ALL9_LATCH H3ALL9_LATCH RAD9A RAD9A BABAM1 BABAM1 ATR ATR RFC3 RFC3 ANKRD11 ANKRD11 H3APN8_LATCH H3APN8_LATCH H2BE1 H2BE1 RAD17 RAD17 RCBTB1 RCBTB1 NSD2 NSD2 POLD4 POLD4 PIAS4 PIAS4 POLH POLH ABRAXAS1 ABRAXAS1 PWWP2A PWWP2A H3AWE1_LATCH H3AWE1_LATCH MUS81 MUS81 H3AYY3_LATCH H3AYY3_LATCH H3AZT0_LATCH H3AZT0_LATCH EME2 EME2 SLX4 SLX4 POLD2 POLD2 PPP4R2 PPP4R2 DNA2 DNA2 H3B1Z1_LATCH H3B1Z1_LATCH GEN1 GEN1 BRCC3 BRCC3 SPIDR SPIDR POLD1 POLD1 SLF1 SLF1 POLE2 POLE2 CHEK1 CHEK1 H3BAV2_LATCH H3BAV2_LATCH RFC5 RFC5 EXO1 EXO1 RAD51 RAD51 POLE POLE RAD51B RAD51B POLE4 POLE4 H3BDB3_LATCH H3BDB3_LATCH RBBP8 RBBP8 RFC4 RFC4 RAD51AP1 RAD51AP1 RAD52 RAD52 RFC2 RFC2 EXD2 EXD2 ATRIP ATRIP CDK2 CDK2 TIMELESS TIMELESS M3XGI0_LATCH M3XGI0_LATCH RAD9B RAD9B RHNO1 RHNO1 BARD1 BARD1 EME1 EME1 POLE3 POLE3 LOC102365863 LOC102365863 M3XK07_LATCH M3XK07_LATCH M3XK14_LATCH M3XK14_LATCH MEIOB MEIOB M3XL57_LATCH M3XL57_LATCH M3XL87_LATCH M3XL87_LATCH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (293 aa)
RAD51CRAD51 paralog C. (368 aa)
H2ZS39_LATCHHistone H2B; Belongs to the histone H2B family. (135 aa)
H2ZS42_LATCHAAA_23 domain-containing protein. (88 aa)
CCNA2Cyclin A2; Belongs to the cyclin family. (447 aa)
H2ZVL4_LATCHHistone domain-containing protein; Belongs to the histone H2B family. (90 aa)
TDRD3Tudor domain containing 3. (746 aa)
H2ZWI5_LATCHUncharacterized protein. (1469 aa)
PALB2PALB2_WD40 domain-containing protein. (874 aa)
UBE2V2Ubiquitin conjugating enzyme E2 V2. (55 aa)
H2ZZP4_LATCHHistone H2B; Belongs to the histone H2B family. (138 aa)
CDCA7Cell division cycle associated 7. (405 aa)
RNF169Ring finger protein 169. (684 aa)
RFC1Replication factor C subunit 1. (1152 aa)
LOC102346166Ubiquitin-like domain-containing protein. (95 aa)
XRCC2X-ray repair cross complementing 2. (282 aa)
LOC102350907Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
H3A2S8_LATCHHistone H2B; Belongs to the histone H2B family. (138 aa)
H3A427_LATCHHistone H2B; Belongs to the histone H2B family. (137 aa)
LOC102361505Histone H2B; Belongs to the histone H2B family. (126 aa)
H3A4B2_LATCHReverse transcriptase domain-containing protein. (787 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (413 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (710 aa)
H3A560_LATCHRAD50 homolog, double strand break repair protein. (1193 aa)
H3A5E7_LATCHHistone H2B; Belongs to the histone H2B family. (130 aa)
H4C11Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
H3A5V3_LATCHRecQ helicase-like 4. (1456 aa)
ATMATM serine/threonine kinase. (2375 aa)
ANKRD12Ankyrin repeat domain 12. (2105 aa)
POLKDNA polymerase kappa. (873 aa)
H3A8A9_LATCHUncharacterized protein. (271 aa)
H3A8P8_LATCHDUF4502 domain-containing protein. (165 aa)
RMI1RecQ mediated genome instability 1. (616 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1542 aa)
LOC102355250Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (264 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
BRCA1BRCA1 DNA repair associated. (1873 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (225 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (542 aa)
H3ABS6_LATCHUncharacterized protein. (443 aa)
BLMBLM RecQ like helicase. (1450 aa)
RMI2RecQ mediated genome instability 2. (158 aa)
PPP4CSerine/threonine-protein phosphatase. (224 aa)
RAD1RAD1 checkpoint DNA exonuclease. (281 aa)
H3AE13_LATCHUncharacterized protein. (380 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (495 aa)
UIMC1Ubiquitin interaction motif containing 1. (735 aa)
UBE2NUbiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family. (159 aa)
H3AF58_LATCHUncharacterized protein. (251 aa)
CCNA1Cyclin A1; Belongs to the cyclin family. (433 aa)
H3AFK9_LATCHRING-type domain-containing protein. (482 aa)
RPS27ARibosomal protein S27a. (156 aa)
LOC102347040Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
LOC102367189Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (342 aa)
H3AGP4_LATCHTower domain-containing protein. (1245 aa)
SIRT6Sirtuin 6. (375 aa)
KXD1Ubiquitin-like domain-containing protein. (231 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (772 aa)
H3AIY4_LATCHUncharacterized protein. (161 aa)
TP53BP1Tumor protein p53 binding protein 1. (2149 aa)
XRCC3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (358 aa)
H3AK44_LATCHHistone domain-containing protein; Belongs to the histone H2B family. (105 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (999 aa)
SIRT7Sirtuin 7. (413 aa)
H3AKN8_LATCHUncharacterized protein. (129 aa)
RPA3Replication protein A3. (121 aa)
POLD3Uncharacterized protein. (373 aa)
H3ALL9_LATCHUncharacterized protein. (251 aa)
RAD9AUncharacterized protein. (273 aa)
BABAM1BRISC and BRCA1 A complex member 1. (323 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2654 aa)
RFC3Replication factor C subunit 3. (237 aa)
ANKRD11Ankyrin repeat domain 11. (2717 aa)
H3APN8_LATCHReverse transcriptase domain-containing protein. (202 aa)
H2BE1Histone H2B; Belongs to the histone H2B family. (122 aa)
RAD17RAD17 checkpoint clamp loader component. (748 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
NSD2Nuclear receptor binding SET domain protein 2. (1348 aa)
POLD4Uncharacterized protein. (122 aa)
PIAS4Protein inhibitor of activated STAT 4. (370 aa)
POLHDNA polymerase eta. (729 aa)
ABRAXAS1Abraxas 1, BRCA1 A complex subunit. (412 aa)
PWWP2APWWP domain containing 2A. (843 aa)
H3AWE1_LATCHUncharacterized protein. (135 aa)
MUS81Uncharacterized protein. (421 aa)
H3AYY3_LATCHUncharacterized protein. (223 aa)
H3AZT0_LATCHUncharacterized protein. (114 aa)
EME2Essential meiotic structure-specific endonuclease subunit 2. (299 aa)
SLX4BTB domain-containing protein. (1393 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
PPP4R2Protein phosphatase 4, regulatory subunit 2b. (410 aa)
DNA2DNA replication helicase/nuclease 2. (925 aa)
H3B1Z1_LATCHUncharacterized protein. (352 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (899 aa)
BRCC3BRCA1/BRCA2-containing complex subunit 3. (291 aa)
SPIDRDUF4503 domain-containing protein. (397 aa)
POLD1DNA polymerase. (1103 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1063 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (531 aa)
CHEK1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (475 aa)
H3BAV2_LATCHUncharacterized protein. (105 aa)
RFC5Replication factor C subunit 5. (333 aa)
EXO1Exonuclease 1. (805 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (341 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2289 aa)
RAD51BRAD51 paralog B. (250 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (133 aa)
H3BDB3_LATCHUncharacterized protein. (402 aa)
RBBP8RB binding protein 8, endonuclease. (906 aa)
RFC4Replication factor C subunit 4. (360 aa)
RAD51AP1RAD51 associated protein 1. (341 aa)
RAD52RAD52 homolog, DNA repair protein. (389 aa)
RFC2Replication factor C subunit 2. (396 aa)
EXD2Exonuclease 3'-5' domain containing 2. (617 aa)
ATRIPATR interacting protein. (782 aa)
CDK2Cyclin dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
TIMELESSTimeless circadian regulator. (1272 aa)
M3XGI0_LATCHUncharacterized protein. (117 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (411 aa)
RHNO1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (319 aa)
BARD1BRCA1 associated RING domain 1. (866 aa)
EME1Essential meiotic structure-specific endonuclease 1. (609 aa)
POLE3Polymerase (DNA directed), epsilon 3 (p17 subunit). (170 aa)
LOC102365863UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
M3XK07_LATCHUncharacterized protein. (251 aa)
M3XK14_LATCHUncharacterized protein. (196 aa)
MEIOBMeiosis specific with OB-fold. (470 aa)
M3XL57_LATCHReverse transcriptase domain-containing protein. (332 aa)
M3XL87_LATCHUncharacterized protein. (157 aa)
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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