STRINGSTRING
LOC102347269 LOC102347269 DMTF1 DMTF1 GCNA GCNA RRN3 RRN3 POLR2E POLR2E CD3EAP CD3EAP GATAD2B GATAD2B CBX3 CBX3 ERCC2 ERCC2 ERCC3 ERCC3 POLR2H POLR2H POLR2K POLR2K MBD2 MBD2 RBBP4 RBBP4 CDK7 CDK7 MBD3 MBD3 TAF1D TAF1D UBTF UBTF MTA2 MTA2 POLR2L POLR2L MNAT1 MNAT1 TBPL2 TBPL2 M3XHQ8_LATCH M3XHQ8_LATCH GTF2H3 GTF2H3 MTA1 MTA1 TBPL1 TBPL1 H2ZVL4_LATCH H2ZVL4_LATCH TTF1 TTF1 LOC102359670 LOC102359670 H2ZS39_LATCH H2ZS39_LATCH H2ZZP4_LATCH H2ZZP4_LATCH CCNH CCNH POLR1A POLR1A POLR1E POLR1E H3A2S8_LATCH H3A2S8_LATCH H3A427_LATCH H3A427_LATCH POLR2F POLR2F LOC102361505 LOC102361505 H3A5E7_LATCH H3A5E7_LATCH H4C11 H4C11 H3A728_LATCH H3A728_LATCH TBP TBP MTA3 MTA3 CHD4 CHD4 TAF1B TAF1B CHD3 CHD3 H3AHS5_LATCH H3AHS5_LATCH ZNRD1 ZNRD1 GTF2H4 GTF2H4 H3AK44_LATCH H3AK44_LATCH GATAD2A GATAD2A POLR1B POLR1B H2BE1 H2BE1 TWISTNB TWISTNB TAF1A TAF1A GTF2H1 GTF2H1 LOC102353559 LOC102353559 H2AZ2 H2AZ2 TAF1C TAF1C ERCC6 ERCC6 RBBP7 RBBP7 POLR1C POLR1C
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102347269Retinoblastoma binding protein 4, like. (429 aa)
DMTF1Cyclin D binding myb like transcription factor 1. (773 aa)
GCNAGerm cell nuclear acidic peptidase. (222 aa)
RRN3RRN3 homolog, RNA polymerase I transcription factor. (619 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
CD3EAPUncharacterized protein. (356 aa)
GATAD2BGATA zinc finger domain containing 2B. (563 aa)
CBX3Chromobox 3. (140 aa)
ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit. (611 aa)
ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit. (795 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
POLR2KRNA polymerase II subunit K. (59 aa)
MBD2Methyl-CpG binding domain protein 2. (267 aa)
RBBP4RB binding protein 4, chromatin remodeling factor. (464 aa)
CDK7Cyclin dependent kinase 7. (210 aa)
MBD3Methyl-CpG binding domain protein 3a. (277 aa)
TAF1DUncharacterized protein. (213 aa)
UBTFUpstream binding transcription factor. (752 aa)
MTA2Metastasis associated 1 family member 2. (641 aa)
POLR2LRNA polymerase II subunit L. (67 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
TBPL2TATA-box binding protein like 2. (344 aa)
M3XHQ8_LATCHUncharacterized protein. (691 aa)
GTF2H3General transcription factor IIH subunit 3. (330 aa)
MTA1Metastasis associated 1. (713 aa)
TBPL1TATA-box binding protein like 1. (124 aa)
H2ZVL4_LATCHHistone domain-containing protein; Belongs to the histone H2B family. (90 aa)
TTF1Transcription termination factor 1. (849 aa)
LOC102359670RNA polymerase I subunit A. (802 aa)
H2ZS39_LATCHHistone H2B; Belongs to the histone H2B family. (135 aa)
H2ZZP4_LATCHHistone H2B; Belongs to the histone H2B family. (138 aa)
CCNHCyclin H; Belongs to the cyclin family. (329 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (917 aa)
POLR1ERNA polymerase I subunit E. (362 aa)
H3A2S8_LATCHHistone H2B; Belongs to the histone H2B family. (138 aa)
H3A427_LATCHHistone H2B; Belongs to the histone H2B family. (137 aa)
POLR2FRNA polymerase II subunit F. (127 aa)
LOC102361505Histone H2B; Belongs to the histone H2B family. (126 aa)
H3A5E7_LATCHHistone H2B; Belongs to the histone H2B family. (130 aa)
H4C11Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
H3A728_LATCHUncharacterized protein. (489 aa)
TBPTATA-box binding protein. (301 aa)
MTA3Metastasis associated 1 family member 3. (438 aa)
CHD4Chromodomain helicase DNA binding protein 4a. (1669 aa)
TAF1BTATA-box binding protein associated factor, RNA polymerase I subunit B. (584 aa)
CHD3Chromodomain helicase DNA binding protein 3. (1975 aa)
H3AHS5_LATCHUncharacterized protein. (725 aa)
ZNRD1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (122 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
H3AK44_LATCHHistone domain-containing protein; Belongs to the histone H2B family. (105 aa)
GATAD2AGATA zinc finger domain containing 2A. (541 aa)
POLR1BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1135 aa)
H2BE1Histone H2B; Belongs to the histone H2B family. (122 aa)
TWISTNBTWIST neighbor. (349 aa)
TAF1ATATA-box binding protein associated factor, RNA polymerase I subunit A. (447 aa)
GTF2H1General transcription factor IIH subunit 1. (548 aa)
LOC102353559General transcription factor IIH subunit. (393 aa)
H2AZ2Histone H2A; Belongs to the histone H2A family. (149 aa)
TAF1CUncharacterized protein. (837 aa)
ERCC6ERCC excision repair 6, chromatin remodeling factor. (1387 aa)
RBBP7WD_REPEATS_REGION domain-containing protein. (421 aa)
POLR1CRNA polymerase I and III subunit C. (330 aa)
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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