(21 nodes) Termination of O-glycan biosynthesis network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102345200	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (229 aa)
	LOC102358544	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (333 aa)
	ST6GALNAC4	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (301 aa)
	H3B8Y7_LATCH	Uncharacterized protein. (1543 aa)
	ST3GAL3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3; Belongs to the glycosyltransferase 29 family. (250 aa)
	ST6GALNAC2	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family. (313 aa)
	LOC102352533	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (331 aa)
	H3AHU4_LATCH	VWFD domain-containing protein. (871 aa)
	LOC102350871	Uncharacterized protein. (1005 aa)
	H2ZW61_LATCH	Uncharacterized protein. (800 aa)
	H2ZYL8_LATCH	Uncharacterized protein. (1101 aa)
	H3A1D6_LATCH	Uncharacterized protein. (1979 aa)
	H3A1M2_LATCH	Uncharacterized protein. (1602 aa)
	LOC102359917	SEA domain-containing protein. (1102 aa)
	H3ACT0_LATCH	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (176 aa)
	VWDE	Von Willebrand factor D and EGF domains. (673 aa)
	ST3GAL2	Alpha2,3-sialyltransferase; Belongs to the glycosyltransferase 29 family. (349 aa)
	H2ZSP3_LATCH	Uncharacterized protein. (529 aa)
	H2ZSU9_LATCH	Uncharacterized protein. (1477 aa)
	ST6GALNAC4-2	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (303 aa)
	LOC102363599	Uncharacterized protein; Belongs to the glycosyltransferase 29 family. (230 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZSP3_LATCH	LOC102350871	ENSLACP00000000414	ENSLACP00000000837	Uncharacterized protein.	Uncharacterized protein.	0.430
H2ZSU9_LATCH	H2ZW61_LATCH	ENSLACP00000000470	ENSLACP00000001632	Uncharacterized protein.	Uncharacterized protein.	0.634
H2ZSU9_LATCH	LOC102350871	ENSLACP00000000470	ENSLACP00000000837	Uncharacterized protein.	Uncharacterized protein.	0.603
H2ZSU9_LATCH	LOC102359917	ENSLACP00000000470	ENSLACP00000003854	Uncharacterized protein.	SEA domain-containing protein.	0.574
H2ZW61_LATCH	H2ZSU9_LATCH	ENSLACP00000001632	ENSLACP00000000470	Uncharacterized protein.	Uncharacterized protein.	0.634
H2ZW61_LATCH	H3B8Y7_LATCH	ENSLACP00000001632	ENSLACP00000018358	Uncharacterized protein.	Uncharacterized protein.	0.727
H2ZW61_LATCH	LOC102350871	ENSLACP00000001632	ENSLACP00000000837	Uncharacterized protein.	Uncharacterized protein.	0.772
H2ZW61_LATCH	LOC102359917	ENSLACP00000001632	ENSLACP00000003854	Uncharacterized protein.	SEA domain-containing protein.	0.582
H2ZYL8_LATCH	LOC102350871	ENSLACP00000002489	ENSLACP00000000837	Uncharacterized protein.	Uncharacterized protein.	0.430
H3ACT0_LATCH	ST3GAL3	ENSLACP00000007451	ENSLACP00000017627	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	ST3 beta-galactoside alpha-2,3-sialyltransferase 3; Belongs to the glycosyltransferase 29 family.	0.908
H3AHU4_LATCH	VWDE	ENSLACP00000009215	ENSLACP00000007696	VWFD domain-containing protein.	Von Willebrand factor D and EGF domains.	0.924
H3B8Y7_LATCH	H2ZW61_LATCH	ENSLACP00000018358	ENSLACP00000001632	Uncharacterized protein.	Uncharacterized protein.	0.727
H3B8Y7_LATCH	LOC102350871	ENSLACP00000018358	ENSLACP00000000837	Uncharacterized protein.	Uncharacterized protein.	0.604
H3B8Y7_LATCH	LOC102359917	ENSLACP00000018358	ENSLACP00000003854	Uncharacterized protein.	SEA domain-containing protein.	0.476
LOC102345200	ST6GALNAC4	ENSLACP00000022018	ENSLACP00000018964	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.924
LOC102350871	H2ZSP3_LATCH	ENSLACP00000000837	ENSLACP00000000414	Uncharacterized protein.	Uncharacterized protein.	0.430
LOC102350871	H2ZSU9_LATCH	ENSLACP00000000837	ENSLACP00000000470	Uncharacterized protein.	Uncharacterized protein.	0.603
LOC102350871	H2ZW61_LATCH	ENSLACP00000000837	ENSLACP00000001632	Uncharacterized protein.	Uncharacterized protein.	0.772
LOC102350871	H2ZYL8_LATCH	ENSLACP00000000837	ENSLACP00000002489	Uncharacterized protein.	Uncharacterized protein.	0.430
LOC102350871	H3B8Y7_LATCH	ENSLACP00000000837	ENSLACP00000018358	Uncharacterized protein.	Uncharacterized protein.	0.604