(12 nodes) Haemolysin-III related network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102351356	Uncharacterized protein. (143 aa)
	PAQR9	Progestin and adipoQ receptor family member 9. (262 aa)
	PAQR3	Uncharacterized protein. (175 aa)
	PAQR8	Progestin and adipoQ receptor family member 8. (359 aa)
	PAQR6	Progestin and adipoQ receptor family member 6. (342 aa)
	ADIPOR1	Adiponectin receptor 1. (377 aa)
	PAQR4	Progestin and adipoQ receptor family member 4. (275 aa)
	PAQR5	Progestin and adipoQ receptor family member 5. (347 aa)
	LOC102366507	Uncharacterized protein. (316 aa)
	ADIPOR2	Adiponectin receptor 2. (372 aa)
	LOC102350151	Uncharacterized protein. (383 aa)
	PAQR7	Progestin and adipoQ receptor family member 7. (352 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADIPOR1	ADIPOR2	ENSLACP00000013484	ENSLACP00000020177	Adiponectin receptor 1.	Adiponectin receptor 2.	0.926
ADIPOR1	LOC102350151	ENSLACP00000013484	ENSLACP00000022900	Adiponectin receptor 1.	Uncharacterized protein.	0.901
ADIPOR1	LOC102351356	ENSLACP00000013484	ENSLACP00000000969	Adiponectin receptor 1.	Uncharacterized protein.	0.570
ADIPOR2	ADIPOR1	ENSLACP00000020177	ENSLACP00000013484	Adiponectin receptor 2.	Adiponectin receptor 1.	0.926
ADIPOR2	LOC102350151	ENSLACP00000020177	ENSLACP00000022900	Adiponectin receptor 2.	Uncharacterized protein.	0.901
LOC102350151	ADIPOR1	ENSLACP00000022900	ENSLACP00000013484	Uncharacterized protein.	Adiponectin receptor 1.	0.901
LOC102350151	ADIPOR2	ENSLACP00000022900	ENSLACP00000020177	Uncharacterized protein.	Adiponectin receptor 2.	0.901
LOC102351356	ADIPOR1	ENSLACP00000000969	ENSLACP00000013484	Uncharacterized protein.	Adiponectin receptor 1.	0.570
LOC102351356	PAQR3	ENSLACP00000000969	ENSLACP00000008121	Uncharacterized protein.	Uncharacterized protein.	0.899
PAQR3	LOC102351356	ENSLACP00000008121	ENSLACP00000000969	Uncharacterized protein.	Uncharacterized protein.	0.899
PAQR4	PAQR9	ENSLACP00000013522	ENSLACP00000007925	Progestin and adipoQ receptor family member 4.	Progestin and adipoQ receptor family member 9.	0.426
PAQR9	PAQR4	ENSLACP00000007925	ENSLACP00000013522	Progestin and adipoQ receptor family member 9.	Progestin and adipoQ receptor family member 4.	0.426