23 items (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WIPI2	WD repeat domain, phosphoinositide interacting 2. (431 aa)
	NEK9	NIMA related kinase 9. (962 aa)
	IFT20	Intraflagellar transport 20. (132 aa)
	RCC1	Regulator of chromosome condensation 1. (422 aa)
	MTOR	Mechanistic target of rapamycin kinase; Belongs to the PI3/PI4-kinase family. (1009 aa)
	ATG3	Autophagy-related protein 3. (314 aa)
	TEX264	Testis expressed 264, ER-phagy receptor. (310 aa)
	H3B8U3_LATCH	Serine/threonine-protein kinase TOR. (1418 aa)
	ATG5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	SQSTM1	Sequestosome 1. (441 aa)
	NEK1	NIMA related kinase 1. (1311 aa)
	MYH11	Myosin heavy chain 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1949 aa)
	TAX1BP1	Tax1 binding protein 1. (831 aa)
	ARL13B	ADP ribosylation factor like GTPase 13B. (343 aa)
	H3ACE0_LATCH	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver. (111 aa)
	LAMP1	Lysosomal associated membrane protein 1. (412 aa)
	NBR1	NBR1 autophagy cargo receptor. (1005 aa)
	KIF3A	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (731 aa)
	IHH	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (410 aa)
	LOC102347143	Uncharacterized protein. (612 aa)
	ATG7	Autophagy related 7. (593 aa)
	BBS4	Bardet-Biedl syndrome 4. (537 aa)
	NEK7	NIMA related kinase 7; Belongs to the protein kinase superfamily. (302 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL13B	BBS4	ENSLACP00000008225	ENSLACP00000002102	ADP ribosylation factor like GTPase 13B.	Bardet-Biedl syndrome 4.	0.461
ARL13B	IFT20	ENSLACP00000008225	ENSLACP00000020475	ADP ribosylation factor like GTPase 13B.	Intraflagellar transport 20.	0.635
ARL13B	KIF3A	ENSLACP00000008225	ENSLACP00000005419	ADP ribosylation factor like GTPase 13B.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.750
ARL13B	NEK7	ENSLACP00000008225	ENSLACP00000001277	ADP ribosylation factor like GTPase 13B.	NIMA related kinase 7; Belongs to the protein kinase superfamily.	0.457
ARL13B	NEK9	ENSLACP00000008225	ENSLACP00000020805	ADP ribosylation factor like GTPase 13B.	NIMA related kinase 9.	0.516
ATG3	ATG5	ENSLACP00000018815	ENSLACP00000015035	Autophagy-related protein 3.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.999
ATG3	ATG7	ENSLACP00000018815	ENSLACP00000003715	Autophagy-related protein 3.	Autophagy related 7.	0.999
ATG3	LAMP1	ENSLACP00000018815	ENSLACP00000006760	Autophagy-related protein 3.	Lysosomal associated membrane protein 1.	0.428
ATG3	NBR1	ENSLACP00000018815	ENSLACP00000005740	Autophagy-related protein 3.	NBR1 autophagy cargo receptor.	0.803
ATG3	NEK9	ENSLACP00000018815	ENSLACP00000020805	Autophagy-related protein 3.	NIMA related kinase 9.	0.540
ATG3	SQSTM1	ENSLACP00000018815	ENSLACP00000013831	Autophagy-related protein 3.	Sequestosome 1.	0.507
ATG3	WIPI2	ENSLACP00000018815	ENSLACP00000008770	Autophagy-related protein 3.	WD repeat domain, phosphoinositide interacting 2.	0.911
ATG5	ATG3	ENSLACP00000015035	ENSLACP00000018815	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy-related protein 3.	0.999
ATG5	ATG7	ENSLACP00000015035	ENSLACP00000003715	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy related 7.	0.986
ATG5	H3B8U3_LATCH	ENSLACP00000015035	ENSLACP00000018314	Autophagy protein 5; Involved in autophagic vesicle formation.	Serine/threonine-protein kinase TOR.	0.453
ATG5	LAMP1	ENSLACP00000015035	ENSLACP00000006760	Autophagy protein 5; Involved in autophagic vesicle formation.	Lysosomal associated membrane protein 1.	0.667
ATG5	MTOR	ENSLACP00000015035	ENSLACP00000018843	Autophagy protein 5; Involved in autophagic vesicle formation.	Mechanistic target of rapamycin kinase; Belongs to the PI3/PI4-kinase family.	0.453
ATG5	NBR1	ENSLACP00000015035	ENSLACP00000005740	Autophagy protein 5; Involved in autophagic vesicle formation.	NBR1 autophagy cargo receptor.	0.850
ATG5	SQSTM1	ENSLACP00000015035	ENSLACP00000013831	Autophagy protein 5; Involved in autophagic vesicle formation.	Sequestosome 1.	0.937
ATG5	WIPI2	ENSLACP00000015035	ENSLACP00000008770	Autophagy protein 5; Involved in autophagic vesicle formation.	WD repeat domain, phosphoinositide interacting 2.	0.962