16 items (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BTBD8	BTB domain containing 8. (1400 aa)
	ELL	Elongation factor for RNA polymerase II. (635 aa)
	CELF5	CUGBP Elav-like family member 5. (355 aa)
	TMEM53	Transmembrane protein 53. (282 aa)
	NOTCH2	Notch receptor 2. (2489 aa)
	TAS1R3	Taste 1 receptor member 3. (838 aa)
	RGL1	Ral guanine nucleotide dissociation stimulator like 1. (770 aa)
	RXFP3	Relaxin family peptide receptor 3. (409 aa)
	ELL3	Uncharacterized protein. (614 aa)
	RHO	Rhodopsin. (355 aa)
	SOX14	SRY-box transcription factor 14. (241 aa)
	PIAS4	Protein inhibitor of activated STAT 4. (370 aa)
	MAP2K2	Mitogen-activated protein kinase kinase 2a. (301 aa)
	ELL2	Elongation factor for RNA polymerase II 2. (633 aa)
	SH3YL1	SH3 and SYLF domain containing 1. (341 aa)
	AMH	Anti-Mullerian hormone. (562 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMH	ELL	ENSLACP00000009733	ENSLACP00000003047	Anti-Mullerian hormone.	Elongation factor for RNA polymerase II.	0.432
BTBD8	CELF5	ENSLACP00000002112	ENSLACP00000009046	BTB domain containing 8.	CUGBP Elav-like family member 5.	0.581
BTBD8	ELL	ENSLACP00000002112	ENSLACP00000003047	BTB domain containing 8.	Elongation factor for RNA polymerase II.	0.532
BTBD8	ELL2	ENSLACP00000002112	ENSLACP00000000389	BTB domain containing 8.	Elongation factor for RNA polymerase II 2.	0.571
BTBD8	ELL3	ENSLACP00000002112	ENSLACP00000015366	BTB domain containing 8.	Uncharacterized protein.	0.580
BTBD8	PIAS4	ENSLACP00000002112	ENSLACP00000012443	BTB domain containing 8.	Protein inhibitor of activated STAT 4.	0.545
BTBD8	RGL1	ENSLACP00000002112	ENSLACP00000017575	BTB domain containing 8.	Ral guanine nucleotide dissociation stimulator like 1.	0.580
BTBD8	RXFP3	ENSLACP00000002112	ENSLACP00000017197	BTB domain containing 8.	Relaxin family peptide receptor 3.	0.491
CELF5	BTBD8	ENSLACP00000009046	ENSLACP00000002112	CUGBP Elav-like family member 5.	BTB domain containing 8.	0.581
CELF5	ELL	ENSLACP00000009046	ENSLACP00000003047	CUGBP Elav-like family member 5.	Elongation factor for RNA polymerase II.	0.575
CELF5	ELL2	ENSLACP00000009046	ENSLACP00000000389	CUGBP Elav-like family member 5.	Elongation factor for RNA polymerase II 2.	0.656
CELF5	ELL3	ENSLACP00000009046	ENSLACP00000015366	CUGBP Elav-like family member 5.	Uncharacterized protein.	0.669
CELF5	MAP2K2	ENSLACP00000009046	ENSLACP00000011091	CUGBP Elav-like family member 5.	Mitogen-activated protein kinase kinase 2a.	0.503
CELF5	PIAS4	ENSLACP00000009046	ENSLACP00000012443	CUGBP Elav-like family member 5.	Protein inhibitor of activated STAT 4.	0.597
CELF5	RGL1	ENSLACP00000009046	ENSLACP00000017575	CUGBP Elav-like family member 5.	Ral guanine nucleotide dissociation stimulator like 1.	0.670
CELF5	RXFP3	ENSLACP00000009046	ENSLACP00000017197	CUGBP Elav-like family member 5.	Relaxin family peptide receptor 3.	0.546
CELF5	SH3YL1	ENSLACP00000009046	ENSLACP00000001734	CUGBP Elav-like family member 5.	SH3 and SYLF domain containing 1.	0.503
CELF5	TMEM53	ENSLACP00000009046	ENSLACP00000009642	CUGBP Elav-like family member 5.	Transmembrane protein 53.	0.503
ELL	AMH	ENSLACP00000003047	ENSLACP00000009733	Elongation factor for RNA polymerase II.	Anti-Mullerian hormone.	0.432
ELL	BTBD8	ENSLACP00000003047	ENSLACP00000002112	Elongation factor for RNA polymerase II.	BTB domain containing 8.	0.532