(7 nodes) (2018) De novo assembly of Schizothorax waltoni transcriptome to identify immune-related genes and microsatellite markers. network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NOD2	Nucleotide binding oligomerization domain containing 2. (854 aa)
	LOC102363742	Uncharacterized protein; Belongs to the peptidase C14A family. (394 aa)
	NOD1	Nucleotide binding oligomerization domain containing 1. (830 aa)
	VCAM1	Vascular cell adhesion molecule 1. (733 aa)
	CADM1	Uncharacterized protein. (321 aa)
	IL18	Uncharacterized protein. (200 aa)
	JAM2	Junctional adhesion molecule 2. (292 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CADM1	VCAM1	ENSLACP00000021258	ENSLACP00000017024	Uncharacterized protein.	Vascular cell adhesion molecule 1.	0.513
IL18	LOC102363742	ENSLACP00000021930	ENSLACP00000016224	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.973
IL18	NOD1	ENSLACP00000021930	ENSLACP00000016876	Uncharacterized protein.	Nucleotide binding oligomerization domain containing 1.	0.465
IL18	NOD2	ENSLACP00000021930	ENSLACP00000011767	Uncharacterized protein.	Nucleotide binding oligomerization domain containing 2.	0.465
LOC102363742	IL18	ENSLACP00000016224	ENSLACP00000021930	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.973
LOC102363742	NOD1	ENSLACP00000016224	ENSLACP00000016876	Uncharacterized protein; Belongs to the peptidase C14A family.	Nucleotide binding oligomerization domain containing 1.	0.673
LOC102363742	NOD2	ENSLACP00000016224	ENSLACP00000011767	Uncharacterized protein; Belongs to the peptidase C14A family.	Nucleotide binding oligomerization domain containing 2.	0.744
NOD1	IL18	ENSLACP00000016876	ENSLACP00000021930	Nucleotide binding oligomerization domain containing 1.	Uncharacterized protein.	0.465
NOD1	LOC102363742	ENSLACP00000016876	ENSLACP00000016224	Nucleotide binding oligomerization domain containing 1.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.673
NOD2	IL18	ENSLACP00000011767	ENSLACP00000021930	Nucleotide binding oligomerization domain containing 2.	Uncharacterized protein.	0.465
NOD2	LOC102363742	ENSLACP00000011767	ENSLACP00000016224	Nucleotide binding oligomerization domain containing 2.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.744
VCAM1	CADM1	ENSLACP00000017024	ENSLACP00000021258	Vascular cell adhesion molecule 1.	Uncharacterized protein.	0.513