(17 nodes) (2022) HOX-Gene Cluster Organization and Genome Duplications in Fishes and Mammals: Transcript Variant Distribution along the Anterior-Posterior Axis. network (Latimeria chalumnae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	HOXD11	Homeobox D11. (294 aa)
	HOXA13	Homeobox A13b. (295 aa)
	HOXA10	Homeobox A10. (557 aa)
	HOXA9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (261 aa)
	HOXA5	Homeobox A5. (269 aa)
	HOXA3	Homeobox A3. (411 aa)
	HOXA2	Homeobox A2b. (366 aa)
	HOXC6	Homeobox C6. (233 aa)
	HOXC4	Homeobox C4. (439 aa)
	HOXB9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (247 aa)
	HOXB7	Homeobox B7. (216 aa)
	HOXB4	Homeobox domain-containing protein. (247 aa)
	HOXB3	Homeobox B3. (404 aa)
	HOXB2	Homeobox B2. (362 aa)
	HOXB1	Homeobox B1. (309 aa)
	HOXD4	Homeobox D4a. (251 aa)
	HOXD3	Homeobox D3. (419 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOXA10	HOXA13	ENSLACP00000019765	ENSLACP00000019815	Homeobox A10.	Homeobox A13b.	0.544
HOXA10	HOXA3	ENSLACP00000019765	ENSLACP00000019613	Homeobox A10.	Homeobox A3.	0.446
HOXA10	HOXA9	ENSLACP00000019765	ENSLACP00000019754	Homeobox A10.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.940
HOXA10	HOXB7	ENSLACP00000019765	ENSLACP00000017111	Homeobox A10.	Homeobox B7.	0.439
HOXA10	HOXD11	ENSLACP00000019765	ENSLACP00000010850	Homeobox A10.	Homeobox D11.	0.468
HOXA13	HOXA10	ENSLACP00000019815	ENSLACP00000019765	Homeobox A13b.	Homeobox A10.	0.544
HOXA2	HOXA3	ENSLACP00000019608	ENSLACP00000019613	Homeobox A2b.	Homeobox A3.	0.487
HOXA2	HOXA5	ENSLACP00000019608	ENSLACP00000019710	Homeobox A2b.	Homeobox A5.	0.459
HOXA2	HOXB3	ENSLACP00000019608	ENSLACP00000016830	Homeobox A2b.	Homeobox B3.	0.409
HOXA3	HOXA10	ENSLACP00000019613	ENSLACP00000019765	Homeobox A3.	Homeobox A10.	0.446
HOXA3	HOXA2	ENSLACP00000019613	ENSLACP00000019608	Homeobox A3.	Homeobox A2b.	0.487
HOXA3	HOXA5	ENSLACP00000019613	ENSLACP00000019710	Homeobox A3.	Homeobox A5.	0.765
HOXA3	HOXA9	ENSLACP00000019613	ENSLACP00000019754	Homeobox A3.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.478
HOXA3	HOXB2	ENSLACP00000019613	ENSLACP00000016793	Homeobox A3.	Homeobox B2.	0.482
HOXA3	HOXB4	ENSLACP00000019613	ENSLACP00000016967	Homeobox A3.	Homeobox domain-containing protein.	0.455
HOXA5	HOXA2	ENSLACP00000019710	ENSLACP00000019608	Homeobox A5.	Homeobox A2b.	0.459
HOXA5	HOXA3	ENSLACP00000019710	ENSLACP00000019613	Homeobox A5.	Homeobox A3.	0.765
HOXA5	HOXB2	ENSLACP00000019710	ENSLACP00000016793	Homeobox A5.	Homeobox B2.	0.437
HOXA5	HOXB4	ENSLACP00000019710	ENSLACP00000016967	Homeobox A5.	Homeobox domain-containing protein.	0.453
HOXA5	HOXB7	ENSLACP00000019710	ENSLACP00000017111	Homeobox A5.	Homeobox B7.	0.456