(19 nodes) Laminin N-terminal domain (domain VI) network (Latimeria chalumnae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LAMB1	Laminin subunit beta 1. (1398 aa)
	LAMB4	Laminin subunit beta 4. (1857 aa)
	LAMC1	Laminin subunit gamma 1. (1472 aa)
	LAMA1	Laminin subunit alpha 1. (2379 aa)
	LAMB3	Laminin subunit beta 3. (1160 aa)
	NTNG2	Netrin G2. (531 aa)
	LAMC3	Laminin subunit gamma 3. (1573 aa)
	LAMA3	Laminin subunit alpha 3. (3364 aa)
	LAMB2	Laminin subunit beta 2. (1781 aa)
	LOC102357703	Laminin, beta 2-like. (1836 aa)
	LOC102357170	Uncharacterized protein. (614 aa)
	LOC102350991	Uncharacterized protein. (1471 aa)
	NTNG1	Netrin G1. (458 aa)
	LAMA2	Uncharacterized protein. (3000 aa)
	LAMA5	Laminin subunit alpha 5. (3482 aa)
	H3AIV1_LATCH	Laminin N-terminal domain-containing protein. (132 aa)
	LOC102346244	Uncharacterized protein. (567 aa)
	NTN1	Netrin 1. (604 aa)
	LOC102356949	Netrin 2. (513 aa)

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3AIV1_LATCH	LAMA2	ENSLACP00000009572	ENSLACP00000011585	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.918
H3AIV1_LATCH	LAMB1	ENSLACP00000009572	ENSLACP00000006898	Laminin N-terminal domain-containing protein.	Laminin subunit beta 1.	0.658
H3AIV1_LATCH	LAMB2	ENSLACP00000009572	ENSLACP00000016840	Laminin N-terminal domain-containing protein.	Laminin subunit beta 2.	0.658
H3AIV1_LATCH	LAMB3	ENSLACP00000009572	ENSLACP00000021201	Laminin N-terminal domain-containing protein.	Laminin subunit beta 3.	0.658
H3AIV1_LATCH	LAMC1	ENSLACP00000009572	ENSLACP00000002940	Laminin N-terminal domain-containing protein.	Laminin subunit gamma 1.	0.931
H3AIV1_LATCH	LAMC3	ENSLACP00000009572	ENSLACP00000018792	Laminin N-terminal domain-containing protein.	Laminin subunit gamma 3.	0.730
H3AIV1_LATCH	LOC102357703	ENSLACP00000009572	ENSLACP00000016278	Laminin N-terminal domain-containing protein.	Laminin, beta 2-like.	0.658
LAMA1	LAMB1	ENSLACP00000000229	ENSLACP00000006898	Laminin subunit alpha 1.	Laminin subunit beta 1.	0.783
LAMA1	LAMB2	ENSLACP00000000229	ENSLACP00000016840	Laminin subunit alpha 1.	Laminin subunit beta 2.	0.783
LAMA1	LAMB3	ENSLACP00000000229	ENSLACP00000021201	Laminin subunit alpha 1.	Laminin subunit beta 3.	0.671
LAMA1	LAMC1	ENSLACP00000000229	ENSLACP00000002940	Laminin subunit alpha 1.	Laminin subunit gamma 1.	0.890
LAMA1	LAMC3	ENSLACP00000000229	ENSLACP00000018792	Laminin subunit alpha 1.	Laminin subunit gamma 3.	0.862
LAMA1	LOC102357703	ENSLACP00000000229	ENSLACP00000016278	Laminin subunit alpha 1.	Laminin, beta 2-like.	0.658
LAMA2	H3AIV1_LATCH	ENSLACP00000011585	ENSLACP00000009572	Uncharacterized protein.	Laminin N-terminal domain-containing protein.	0.918
LAMA2	LAMB1	ENSLACP00000011585	ENSLACP00000006898	Uncharacterized protein.	Laminin subunit beta 1.	0.886
LAMA2	LAMB2	ENSLACP00000011585	ENSLACP00000016840	Uncharacterized protein.	Laminin subunit beta 2.	0.787
LAMA2	LAMB3	ENSLACP00000011585	ENSLACP00000021201	Uncharacterized protein.	Laminin subunit beta 3.	0.683
LAMA2	LAMC1	ENSLACP00000011585	ENSLACP00000002940	Uncharacterized protein.	Laminin subunit gamma 1.	0.848
LAMA2	LAMC3	ENSLACP00000011585	ENSLACP00000018792	Uncharacterized protein.	Laminin subunit gamma 3.	0.848
LAMA2	LOC102357703	ENSLACP00000011585	ENSLACP00000016278	Uncharacterized protein.	Laminin, beta 2-like.	0.658