(5 nodes) Mixed, incl. Ribosomal protein S17, and Ribosomal protein S15 network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	W5M642_LEPOC	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (132 aa)
	W5MIR9_LEPOC	Si:dkey-159f12.2. (110 aa)
	cd74	CD74 molecule, major histocompatibility complex, class II invariant chain a. (289 aa)
	rps17	Ribosomal protein S17. (135 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5M642_LEPOC	W5MIR9_LEPOC	ENSLOCP00000003850	ENSLOCP00000008278	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Si:dkey-159f12.2.	0.999
W5M642_LEPOC	cd74	ENSLOCP00000003850	ENSLOCP00000013504	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	CD74 molecule, major histocompatibility complex, class II invariant chain a.	0.997
W5M642_LEPOC	rps13	ENSLOCP00000003850	ENSLOCP00000003514	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
W5M642_LEPOC	rps17	ENSLOCP00000003850	ENSLOCP00000018465	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ribosomal protein S17.	0.999
W5MIR9_LEPOC	W5M642_LEPOC	ENSLOCP00000008278	ENSLOCP00000003850	Si:dkey-159f12.2.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
W5MIR9_LEPOC	cd74	ENSLOCP00000008278	ENSLOCP00000013504	Si:dkey-159f12.2.	CD74 molecule, major histocompatibility complex, class II invariant chain a.	0.998
W5MIR9_LEPOC	rps13	ENSLOCP00000008278	ENSLOCP00000003514	Si:dkey-159f12.2.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
W5MIR9_LEPOC	rps17	ENSLOCP00000008278	ENSLOCP00000018465	Si:dkey-159f12.2.	Ribosomal protein S17.	0.999
cd74	W5M642_LEPOC	ENSLOCP00000013504	ENSLOCP00000003850	CD74 molecule, major histocompatibility complex, class II invariant chain a.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.997
cd74	W5MIR9_LEPOC	ENSLOCP00000013504	ENSLOCP00000008278	CD74 molecule, major histocompatibility complex, class II invariant chain a.	Si:dkey-159f12.2.	0.998
cd74	rps13	ENSLOCP00000013504	ENSLOCP00000003514	CD74 molecule, major histocompatibility complex, class II invariant chain a.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.997
cd74	rps17	ENSLOCP00000013504	ENSLOCP00000018465	CD74 molecule, major histocompatibility complex, class II invariant chain a.	Ribosomal protein S17.	0.982
rps13	W5M642_LEPOC	ENSLOCP00000003514	ENSLOCP00000003850	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
rps13	W5MIR9_LEPOC	ENSLOCP00000003514	ENSLOCP00000008278	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Si:dkey-159f12.2.	0.999
rps13	cd74	ENSLOCP00000003514	ENSLOCP00000013504	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	CD74 molecule, major histocompatibility complex, class II invariant chain a.	0.997
rps13	rps17	ENSLOCP00000003514	ENSLOCP00000018465	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein S17.	0.999
rps17	W5M642_LEPOC	ENSLOCP00000018465	ENSLOCP00000003850	Ribosomal protein S17.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
rps17	W5MIR9_LEPOC	ENSLOCP00000018465	ENSLOCP00000008278	Ribosomal protein S17.	Si:dkey-159f12.2.	0.999
rps17	cd74	ENSLOCP00000018465	ENSLOCP00000013504	Ribosomal protein S17.	CD74 molecule, major histocompatibility complex, class II invariant chain a.	0.982
rps17	rps13	ENSLOCP00000018465	ENSLOCP00000003514	Ribosomal protein S17.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999