(11 nodes) U5 snRNP, and SART-1 family network (Lepisosteus oculatus)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	W5M189_LEPOC	Uncharacterized protein. (170 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (500 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (995 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (350 aa)
	prpf8	Pre-mRNA processing factor 8. (2338 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (818 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (977 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2138 aa)
	W5NP19_LEPOC	Organic solute carrier partner 1a. (122 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SART1	W5M189_LEPOC	ENSLOCP00000002163	ENSLOCP00000002146	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Uncharacterized protein.	0.960
SART1	W5NP19_LEPOC	ENSLOCP00000002163	ENSLOCP00000022378	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Organic solute carrier partner 1a.	0.870
SART1	ddx23	ENSLOCP00000002163	ENSLOCP00000008960	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.965
SART1	eftud2	ENSLOCP00000002163	ENSLOCP00000014090	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Elongation factor Tu GTP binding domain containing 2.	0.984
SART1	prpf6	ENSLOCP00000002163	ENSLOCP00000005808	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.989
SART1	prpf8	ENSLOCP00000002163	ENSLOCP00000006539	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Pre-mRNA processing factor 8.	0.967
SART1	snrnp200	ENSLOCP00000002163	ENSLOCP00000018708	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Small nuclear ribonucleoprotein 200 (U5).	0.970
SART1	snrnp40	ENSLOCP00000002163	ENSLOCP00000006348	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Small nuclear ribonucleoprotein 40 (U5).	0.927
SART1	snrpe	ENSLOCP00000002163	ENSLOCP00000014664	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.974
SART1	txnl4a	ENSLOCP00000002163	ENSLOCP00000010235	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.954
W5M189_LEPOC	SART1	ENSLOCP00000002146	ENSLOCP00000002163	Uncharacterized protein.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.960
W5M189_LEPOC	W5NP19_LEPOC	ENSLOCP00000002146	ENSLOCP00000022378	Uncharacterized protein.	Organic solute carrier partner 1a.	0.870
W5M189_LEPOC	ddx23	ENSLOCP00000002146	ENSLOCP00000008960	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.965
W5M189_LEPOC	eftud2	ENSLOCP00000002146	ENSLOCP00000014090	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.977
W5M189_LEPOC	prpf6	ENSLOCP00000002146	ENSLOCP00000005808	Uncharacterized protein.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.986
W5M189_LEPOC	prpf8	ENSLOCP00000002146	ENSLOCP00000006539	Uncharacterized protein.	Pre-mRNA processing factor 8.	0.967
W5M189_LEPOC	snrnp200	ENSLOCP00000002146	ENSLOCP00000018708	Uncharacterized protein.	Small nuclear ribonucleoprotein 200 (U5).	0.970
W5M189_LEPOC	snrnp40	ENSLOCP00000002146	ENSLOCP00000006348	Uncharacterized protein.	Small nuclear ribonucleoprotein 40 (U5).	0.927
W5M189_LEPOC	snrpe	ENSLOCP00000002146	ENSLOCP00000014664	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.964
W5M189_LEPOC	txnl4a	ENSLOCP00000002146	ENSLOCP00000010235	Uncharacterized protein.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.937