(10 nodes) Limb expression 1, and Cadherin conserved site network (Lepisosteus oculatus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fat4	FAT atypical cadherin 4. (4947 aa)
	lix1	Limb and CNS expressed 1. (288 aa)
	fat3	FAT atypical cadherin 3a. (4614 aa)
	dchs2	Uncharacterized protein. (3266 aa)
	dchs1	Dachsous cadherin-related 1a. (3282 aa)
	LIX1L	Limb and CNS expressed 1 like. (357 aa)
	fat2	FAT atypical cadherin 2. (4355 aa)
	fat1	FAT atypical cadherin 1a. (4611 aa)
	fjx1	Four-jointed box kinase 1. (429 aa)
	PCDH20	Protocadherin 20. (872 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LIX1L	PCDH20	ENSLOCP00000011083	ENSLOCP00000021885	Limb and CNS expressed 1 like.	Protocadherin 20.	0.617
LIX1L	dchs1	ENSLOCP00000011083	ENSLOCP00000010555	Limb and CNS expressed 1 like.	Dachsous cadherin-related 1a.	0.513
LIX1L	dchs2	ENSLOCP00000011083	ENSLOCP00000010244	Limb and CNS expressed 1 like.	Uncharacterized protein.	0.452
LIX1L	fat1	ENSLOCP00000011083	ENSLOCP00000017098	Limb and CNS expressed 1 like.	FAT atypical cadherin 1a.	0.759
LIX1L	fat2	ENSLOCP00000011083	ENSLOCP00000014379	Limb and CNS expressed 1 like.	FAT atypical cadherin 2.	0.759
LIX1L	fat3	ENSLOCP00000011083	ENSLOCP00000008790	Limb and CNS expressed 1 like.	FAT atypical cadherin 3a.	0.746
LIX1L	fat4	ENSLOCP00000011083	ENSLOCP00000003187	Limb and CNS expressed 1 like.	FAT atypical cadherin 4.	0.405
PCDH20	LIX1L	ENSLOCP00000021885	ENSLOCP00000011083	Protocadherin 20.	Limb and CNS expressed 1 like.	0.617
PCDH20	fjx1	ENSLOCP00000021885	ENSLOCP00000021422	Protocadherin 20.	Four-jointed box kinase 1.	0.705
PCDH20	lix1	ENSLOCP00000021885	ENSLOCP00000007805	Protocadherin 20.	Limb and CNS expressed 1.	0.617
dchs1	LIX1L	ENSLOCP00000010555	ENSLOCP00000011083	Dachsous cadherin-related 1a.	Limb and CNS expressed 1 like.	0.513
dchs1	fat1	ENSLOCP00000010555	ENSLOCP00000017098	Dachsous cadherin-related 1a.	FAT atypical cadherin 1a.	0.560
dchs1	fat2	ENSLOCP00000010555	ENSLOCP00000014379	Dachsous cadherin-related 1a.	FAT atypical cadherin 2.	0.560
dchs1	fjx1	ENSLOCP00000010555	ENSLOCP00000021422	Dachsous cadherin-related 1a.	Four-jointed box kinase 1.	0.740
dchs1	lix1	ENSLOCP00000010555	ENSLOCP00000007805	Dachsous cadherin-related 1a.	Limb and CNS expressed 1.	0.452
dchs2	LIX1L	ENSLOCP00000010244	ENSLOCP00000011083	Uncharacterized protein.	Limb and CNS expressed 1 like.	0.452
dchs2	fat1	ENSLOCP00000010244	ENSLOCP00000017098	Uncharacterized protein.	FAT atypical cadherin 1a.	0.560
dchs2	fat2	ENSLOCP00000010244	ENSLOCP00000014379	Uncharacterized protein.	FAT atypical cadherin 2.	0.560
dchs2	fjx1	ENSLOCP00000010244	ENSLOCP00000021422	Uncharacterized protein.	Four-jointed box kinase 1.	0.740
dchs2	lix1	ENSLOCP00000010244	ENSLOCP00000007805	Uncharacterized protein.	Limb and CNS expressed 1.	0.452