(10 nodes) Vitellogenin, N-terminal, and Apolipoprotein A/E network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5MA33_LEPOC	Apolipoprotein A-IV b, tandem duplicate 2. (261 aa)
	LOC107075384	Uncharacterized protein. (149 aa)
	W5MCA6_LEPOC	Uncharacterized protein. (857 aa)
	W5MGL6_LEPOC	Apolipoprotein A-Ia. (293 aa)
	W5MM68_LEPOC	BPI2 domain-containing protein. (317 aa)
	W5MPP0_LEPOC	Uncharacterized protein. (1676 aa)
	W5MVE2_LEPOC	Uncharacterized protein. (1644 aa)
	W5MVK7_LEPOC	Vitellogenin 5. (1781 aa)
	mttp	Microsomal triglyceride transfer protein. (889 aa)
	apob	Apolipoprotein Bb, tandem duplicate 1. (4554 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107075384	W5MA33_LEPOC	ENSLOCP00000005257	ENSLOCP00000005242	Uncharacterized protein.	Apolipoprotein A-IV b, tandem duplicate 2.	0.901
LOC107075384	W5MGL6_LEPOC	ENSLOCP00000005257	ENSLOCP00000007525	Uncharacterized protein.	Apolipoprotein A-Ia.	0.913
LOC107075384	W5MM68_LEPOC	ENSLOCP00000005257	ENSLOCP00000009477	Uncharacterized protein.	BPI2 domain-containing protein.	0.788
LOC107075384	W5MPP0_LEPOC	ENSLOCP00000005257	ENSLOCP00000010349	Uncharacterized protein.	Uncharacterized protein.	0.755
LOC107075384	W5MVE2_LEPOC	ENSLOCP00000005257	ENSLOCP00000012351	Uncharacterized protein.	Uncharacterized protein.	0.755
LOC107075384	W5MVK7_LEPOC	ENSLOCP00000005257	ENSLOCP00000012416	Uncharacterized protein.	Vitellogenin 5.	0.755
LOC107075384	apob	ENSLOCP00000005257	ENSLOCP00000021270	Uncharacterized protein.	Apolipoprotein Bb, tandem duplicate 1.	0.947
W5MA33_LEPOC	LOC107075384	ENSLOCP00000005242	ENSLOCP00000005257	Apolipoprotein A-IV b, tandem duplicate 2.	Uncharacterized protein.	0.901
W5MA33_LEPOC	W5MCA6_LEPOC	ENSLOCP00000005242	ENSLOCP00000006015	Apolipoprotein A-IV b, tandem duplicate 2.	Uncharacterized protein.	0.547
W5MA33_LEPOC	W5MGL6_LEPOC	ENSLOCP00000005242	ENSLOCP00000007525	Apolipoprotein A-IV b, tandem duplicate 2.	Apolipoprotein A-Ia.	0.737
W5MA33_LEPOC	W5MM68_LEPOC	ENSLOCP00000005242	ENSLOCP00000009477	Apolipoprotein A-IV b, tandem duplicate 2.	BPI2 domain-containing protein.	0.828
W5MA33_LEPOC	W5MPP0_LEPOC	ENSLOCP00000005242	ENSLOCP00000010349	Apolipoprotein A-IV b, tandem duplicate 2.	Uncharacterized protein.	0.858
W5MA33_LEPOC	W5MVE2_LEPOC	ENSLOCP00000005242	ENSLOCP00000012351	Apolipoprotein A-IV b, tandem duplicate 2.	Uncharacterized protein.	0.858
W5MA33_LEPOC	W5MVK7_LEPOC	ENSLOCP00000005242	ENSLOCP00000012416	Apolipoprotein A-IV b, tandem duplicate 2.	Vitellogenin 5.	0.858
W5MA33_LEPOC	apob	ENSLOCP00000005242	ENSLOCP00000021270	Apolipoprotein A-IV b, tandem duplicate 2.	Apolipoprotein Bb, tandem duplicate 1.	0.982
W5MA33_LEPOC	mttp	ENSLOCP00000005242	ENSLOCP00000015149	Apolipoprotein A-IV b, tandem duplicate 2.	Microsomal triglyceride transfer protein.	0.547
W5MCA6_LEPOC	W5MA33_LEPOC	ENSLOCP00000006015	ENSLOCP00000005242	Uncharacterized protein.	Apolipoprotein A-IV b, tandem duplicate 2.	0.547
W5MCA6_LEPOC	W5MPP0_LEPOC	ENSLOCP00000006015	ENSLOCP00000010349	Uncharacterized protein.	Uncharacterized protein.	0.807
W5MCA6_LEPOC	W5MVE2_LEPOC	ENSLOCP00000006015	ENSLOCP00000012351	Uncharacterized protein.	Uncharacterized protein.	0.807
W5MCA6_LEPOC	W5MVK7_LEPOC	ENSLOCP00000006015	ENSLOCP00000012416	Uncharacterized protein.	Vitellogenin 5.	0.807