(38 nodes) RAB geranylgeranylation, and Rab GDI protein network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5LWL1_LEPOC	AIG1-type G domain-containing protein. (344 aa)
	LOC102682683	Uncharacterized protein. (197 aa)
	W5M0R4_LEPOC	Uncharacterized protein. (193 aa)
	rasef	RAS and EF-hand domain containing. (704 aa)
	lmln	Leishmanolysin-like peptidase. (658 aa)
	LOC102695725	RAB42, member RAS oncogene family a. (212 aa)
	LOC102695918	Si:dkey-34d22.5. (215 aa)
	rab8a	RAB8A, member RAS oncogene family. (207 aa)
	W5M713_LEPOC	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (338 aa)
	smcr8	Smith-Magenis syndrome chromosome region, candidate 8a. (926 aa)
	rab2a	RAB2A, member RAS oncogene family. (212 aa)
	rab14	RAB14, member RAS oncogene family. (215 aa)
	wdr41	WD repeat domain 41. (448 aa)
	W5MF00_LEPOC	Rab interacting lysosomal protein-like 2. (206 aa)
	RILPL1	Rab interacting lysosomal protein like 1. (391 aa)
	W5MI66_LEPOC	RAB13, member RAS oncogene family. (162 aa)
	rab39a	Uncharacterized protein. (213 aa)
	ptar1	Protein prenyltransferase alpha subunit repeat containing 1. (468 aa)
	rabif	RAB interacting factor. (131 aa)
	tbc1d4	TBC1 domain family, member 4. (1269 aa)
	c9orf72	Zgc:100846. (461 aa)
	rab15	RAB15, member RAS oncogene family. (212 aa)
	rab44	Uncharacterized protein. (1556 aa)
	RAB7B	RAB7B, member RAS oncogene family. (200 aa)
	W5N5G9_LEPOC	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1. (1151 aa)
	fyco1	FYVE and coiled-coil domain containing 1a. (1540 aa)
	rab43	RAB43, member RAS oncogene family. (207 aa)
	LOC102691742	CHM Rab escort protein. (680 aa)
	W5NAS2_LEPOC	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (369 aa)
	LOC102684782	Zgc:171927. (213 aa)
	LOC102698928	Si:dkey-13a21.4. (205 aa)
	rab39b	RAB39B, member RAS oncogene family b. (217 aa)
	rab41	RAB41, member RAS oncogene family. (211 aa)
	gdi1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)
	LOC102697663	Zgc:100918. (206 aa)
	gdi2	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)
	LOC102696031	Uncharacterized protein. (214 aa)
	rab10	RAB10, member RAS oncogene family. (201 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102682683	LOC102684782	ENSLOCP00000000564	ENSLOCP00000018084	Uncharacterized protein.	Zgc:171927.	0.761
LOC102682683	LOC102691742	ENSLOCP00000000564	ENSLOCP00000017566	Uncharacterized protein.	CHM Rab escort protein.	0.713
LOC102682683	LOC102695725	ENSLOCP00000000564	ENSLOCP00000004092	Uncharacterized protein.	RAB42, member RAS oncogene family a.	0.566
LOC102682683	LOC102695918	ENSLOCP00000000564	ENSLOCP00000004109	Uncharacterized protein.	Si:dkey-34d22.5.	0.493
LOC102682683	LOC102696031	ENSLOCP00000000564	ENSLOCP00000019479	Uncharacterized protein.	Uncharacterized protein.	0.518
LOC102682683	LOC102698928	ENSLOCP00000000564	ENSLOCP00000018160	Uncharacterized protein.	Si:dkey-13a21.4.	0.475
LOC102682683	RAB7B	ENSLOCP00000000564	ENSLOCP00000015662	Uncharacterized protein.	RAB7B, member RAS oncogene family.	0.481
LOC102682683	RILPL1	ENSLOCP00000000564	ENSLOCP00000006976	Uncharacterized protein.	Rab interacting lysosomal protein like 1.	0.607
LOC102682683	W5LWL1_LEPOC	ENSLOCP00000000564	ENSLOCP00000000518	Uncharacterized protein.	AIG1-type G domain-containing protein.	0.433
LOC102682683	W5M0R4_LEPOC	ENSLOCP00000000564	ENSLOCP00000001971	Uncharacterized protein.	Uncharacterized protein.	0.752
LOC102682683	W5M713_LEPOC	ENSLOCP00000000564	ENSLOCP00000004171	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.721
LOC102682683	W5MF00_LEPOC	ENSLOCP00000000564	ENSLOCP00000006959	Uncharacterized protein.	Rab interacting lysosomal protein-like 2.	0.733
LOC102682683	W5N5G9_LEPOC	ENSLOCP00000000564	ENSLOCP00000015878	Uncharacterized protein.	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.	0.538
LOC102682683	W5NAS2_LEPOC	ENSLOCP00000000564	ENSLOCP00000017731	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.787
LOC102682683	c9orf72	ENSLOCP00000000564	ENSLOCP00000014980	Uncharacterized protein.	Zgc:100846.	0.636
LOC102682683	gdi1	ENSLOCP00000000564	ENSLOCP00000019051	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.787
LOC102682683	gdi2	ENSLOCP00000000564	ENSLOCP00000019265	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.787
LOC102682683	lmln	ENSLOCP00000000564	ENSLOCP00000003385	Uncharacterized protein.	Leishmanolysin-like peptidase.	0.479
LOC102682683	ptar1	ENSLOCP00000000564	ENSLOCP00000011553	Uncharacterized protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.483
LOC102682683	rab14	ENSLOCP00000000564	ENSLOCP00000006653	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.663