(13 nodes) Mixed, incl. GDP dissociation inhibitor, and Protein prenyltransferase activity network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5M0R4_LEPOC	Uncharacterized protein. (193 aa)
	W5M713_LEPOC	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (338 aa)
	W5MI66_LEPOC	RAB13, member RAS oncogene family. (162 aa)
	rab39a	Uncharacterized protein. (213 aa)
	ptar1	Protein prenyltransferase alpha subunit repeat containing 1. (468 aa)
	rab15	RAB15, member RAS oncogene family. (212 aa)
	rab43	RAB43, member RAS oncogene family. (207 aa)
	LOC102691742	CHM Rab escort protein. (680 aa)
	W5NAS2_LEPOC	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (369 aa)
	LOC102684782	Zgc:171927. (213 aa)
	rab41	RAB41, member RAS oncogene family. (211 aa)
	gdi1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)
	gdi2	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (447 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102684782	LOC102691742	ENSLOCP00000018084	ENSLOCP00000017566	Zgc:171927.	CHM Rab escort protein.	0.766
LOC102684782	W5M0R4_LEPOC	ENSLOCP00000018084	ENSLOCP00000001971	Zgc:171927.	Uncharacterized protein.	0.789
LOC102684782	W5M713_LEPOC	ENSLOCP00000018084	ENSLOCP00000004171	Zgc:171927.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.883
LOC102684782	W5MI66_LEPOC	ENSLOCP00000018084	ENSLOCP00000008075	Zgc:171927.	RAB13, member RAS oncogene family.	0.759
LOC102684782	W5NAS2_LEPOC	ENSLOCP00000018084	ENSLOCP00000017731	Zgc:171927.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.890
LOC102684782	gdi1	ENSLOCP00000018084	ENSLOCP00000019051	Zgc:171927.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.890
LOC102684782	gdi2	ENSLOCP00000018084	ENSLOCP00000019265	Zgc:171927.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.890
LOC102684782	ptar1	ENSLOCP00000018084	ENSLOCP00000011553	Zgc:171927.	Protein prenyltransferase alpha subunit repeat containing 1.	0.675
LOC102684782	rab15	ENSLOCP00000018084	ENSLOCP00000015273	Zgc:171927.	RAB15, member RAS oncogene family.	0.763
LOC102684782	rab39a	ENSLOCP00000018084	ENSLOCP00000008155	Zgc:171927.	Uncharacterized protein.	0.436
LOC102684782	rab41	ENSLOCP00000018084	ENSLOCP00000018691	Zgc:171927.	RAB41, member RAS oncogene family.	0.682
LOC102691742	LOC102684782	ENSLOCP00000017566	ENSLOCP00000018084	CHM Rab escort protein.	Zgc:171927.	0.766
LOC102691742	W5M0R4_LEPOC	ENSLOCP00000017566	ENSLOCP00000001971	CHM Rab escort protein.	Uncharacterized protein.	0.773
LOC102691742	W5M713_LEPOC	ENSLOCP00000017566	ENSLOCP00000004171	CHM Rab escort protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.981
LOC102691742	W5MI66_LEPOC	ENSLOCP00000017566	ENSLOCP00000008075	CHM Rab escort protein.	RAB13, member RAS oncogene family.	0.713
LOC102691742	W5NAS2_LEPOC	ENSLOCP00000017566	ENSLOCP00000017731	CHM Rab escort protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.630
LOC102691742	gdi1	ENSLOCP00000017566	ENSLOCP00000019051	CHM Rab escort protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.630
LOC102691742	gdi2	ENSLOCP00000017566	ENSLOCP00000019265	CHM Rab escort protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.630
LOC102691742	ptar1	ENSLOCP00000017566	ENSLOCP00000011553	CHM Rab escort protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.988
LOC102691742	rab15	ENSLOCP00000017566	ENSLOCP00000015273	CHM Rab escort protein.	RAB15, member RAS oncogene family.	0.713