(5 nodes) VWF/SSPO/Zonadhesin-like, cysteine-rich domain network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5MIU5_LEPOC	Uncharacterized protein. (966 aa)
	W5MIW8_LEPOC	Uncharacterized protein. (792 aa)
	W5NGT4_LEPOC	Uncharacterized protein. (874 aa)
	LOC107078024	Uncharacterized protein. (682 aa)
	W5NGU0_LEPOC	C8 domain-containing protein. (215 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107078024	W5MIU5_LEPOC	ENSLOCP00000019847	ENSLOCP00000008304	Uncharacterized protein.	Uncharacterized protein.	0.712
LOC107078024	W5MIW8_LEPOC	ENSLOCP00000019847	ENSLOCP00000008327	Uncharacterized protein.	Uncharacterized protein.	0.837
LOC107078024	W5NGU0_LEPOC	ENSLOCP00000019847	ENSLOCP00000019849	Uncharacterized protein.	C8 domain-containing protein.	0.940
W5MIU5_LEPOC	LOC107078024	ENSLOCP00000008304	ENSLOCP00000019847	Uncharacterized protein.	Uncharacterized protein.	0.712
W5MIU5_LEPOC	W5NGT4_LEPOC	ENSLOCP00000008304	ENSLOCP00000019843	Uncharacterized protein.	Uncharacterized protein.	0.772
W5MIU5_LEPOC	W5NGU0_LEPOC	ENSLOCP00000008304	ENSLOCP00000019849	Uncharacterized protein.	C8 domain-containing protein.	0.885
W5MIW8_LEPOC	LOC107078024	ENSLOCP00000008327	ENSLOCP00000019847	Uncharacterized protein.	Uncharacterized protein.	0.837
W5MIW8_LEPOC	W5NGT4_LEPOC	ENSLOCP00000008327	ENSLOCP00000019843	Uncharacterized protein.	Uncharacterized protein.	0.875
W5MIW8_LEPOC	W5NGU0_LEPOC	ENSLOCP00000008327	ENSLOCP00000019849	Uncharacterized protein.	C8 domain-containing protein.	0.883
W5NGT4_LEPOC	W5MIU5_LEPOC	ENSLOCP00000019843	ENSLOCP00000008304	Uncharacterized protein.	Uncharacterized protein.	0.772
W5NGT4_LEPOC	W5MIW8_LEPOC	ENSLOCP00000019843	ENSLOCP00000008327	Uncharacterized protein.	Uncharacterized protein.	0.875
W5NGT4_LEPOC	W5NGU0_LEPOC	ENSLOCP00000019843	ENSLOCP00000019849	Uncharacterized protein.	C8 domain-containing protein.	0.937
W5NGU0_LEPOC	LOC107078024	ENSLOCP00000019849	ENSLOCP00000019847	C8 domain-containing protein.	Uncharacterized protein.	0.940
W5NGU0_LEPOC	W5MIU5_LEPOC	ENSLOCP00000019849	ENSLOCP00000008304	C8 domain-containing protein.	Uncharacterized protein.	0.885
W5NGU0_LEPOC	W5MIW8_LEPOC	ENSLOCP00000019849	ENSLOCP00000008327	C8 domain-containing protein.	Uncharacterized protein.	0.883
W5NGU0_LEPOC	W5NGT4_LEPOC	ENSLOCP00000019849	ENSLOCP00000019843	C8 domain-containing protein.	Uncharacterized protein.	0.937