23 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LHX1	LIM homeobox 1. (173 aa)
	W5LVW3_LEPOC	Uncharacterized protein. (329 aa)
	sema3a	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (774 aa)
	nkx2-2	NK2 homeobox 2b. (276 aa)
	LOC102690743	Ras homolog gene family, member Gc. (191 aa)
	e2f7	E2F transcription factor 7. (916 aa)
	rhog	Ras homolog family member Gb. (191 aa)
	PPP1R12A	Protein phosphatase 1 regulatory subunit. (1089 aa)
	chst11	Carbohydrate sulfotransferase. (351 aa)
	W5NAX9_LEPOC	Netrin 5. (720 aa)
	ntn1	Netrin 1b. (605 aa)
	rest	RE1-silencing transcription factor. (1060 aa)
	LOC102694198	Survival of motor neuron 1, telomeric. (279 aa)
	rnf165	Ring finger protein 165a. (347 aa)
	sema3f	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (792 aa)
	W5MTM1_LEPOC	C-type lectin domain-containing protein. (194 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	ntn3	Netrin 2. (602 aa)
	LOC102682995	Notum pectinacetylesterase 2. (486 aa)
	cdh2	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins. (911 aa)
	W5MC53_LEPOC	LIM homeobox 1a. (373 aa)
	W5MBP2_LEPOC	E2F transcription factor 8. (956 aa)
	tmem41b	Transmembrane protein 41B. (291 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102690743	PPP1R12A	ENSLOCP00000021588	ENSLOCP00000020097	Ras homolog gene family, member Gc.	Protein phosphatase 1 regulatory subunit.	0.474
LOC102690743	W5LVW3_LEPOC	ENSLOCP00000021588	ENSLOCP00000000270	Ras homolog gene family, member Gc.	Uncharacterized protein.	0.474
PPP1R12A	LOC102690743	ENSLOCP00000020097	ENSLOCP00000021588	Protein phosphatase 1 regulatory subunit.	Ras homolog gene family, member Gc.	0.474
PPP1R12A	rhog	ENSLOCP00000020097	ENSLOCP00000022124	Protein phosphatase 1 regulatory subunit.	Ras homolog family member Gb.	0.474
W5LVW3_LEPOC	LOC102690743	ENSLOCP00000000270	ENSLOCP00000021588	Uncharacterized protein.	Ras homolog gene family, member Gc.	0.474
W5LVW3_LEPOC	rhog	ENSLOCP00000000270	ENSLOCP00000022124	Uncharacterized protein.	Ras homolog family member Gb.	0.474
W5MBP2_LEPOC	e2f7	ENSLOCP00000005801	ENSLOCP00000020082	E2F transcription factor 8.	E2F transcription factor 7.	0.686
W5MTM1_LEPOC	tmem41b	ENSLOCP00000011730	ENSLOCP00000004254	C-type lectin domain-containing protein.	Transmembrane protein 41B.	0.450
cdk5	sema3a	ENSLOCP00000011332	ENSLOCP00000020255	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.655
e2f7	W5MBP2_LEPOC	ENSLOCP00000020082	ENSLOCP00000005801	E2F transcription factor 7.	E2F transcription factor 8.	0.686
rhog	PPP1R12A	ENSLOCP00000022124	ENSLOCP00000020097	Ras homolog family member Gb.	Protein phosphatase 1 regulatory subunit.	0.474
rhog	W5LVW3_LEPOC	ENSLOCP00000022124	ENSLOCP00000000270	Ras homolog family member Gb.	Uncharacterized protein.	0.474
sema3a	cdk5	ENSLOCP00000020255	ENSLOCP00000011332	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.655
tmem41b	W5MTM1_LEPOC	ENSLOCP00000004254	ENSLOCP00000011730	Transmembrane protein 41B.	C-type lectin domain-containing protein.	0.450