STRINGSTRING
LOC102694475 LOC102694475 pabpc4 pabpc4 dazap1 dazap1 rbms3 rbms3 W5M4V9_LEPOC W5M4V9_LEPOC LOC102691565 LOC102691565 mcrs1 mcrs1 msi2 msi2 dis3l2 dis3l2 W5ML68_LEPOC W5ML68_LEPOC ssb ssb W5MQ16_LEPOC W5MQ16_LEPOC rbms1 rbms1 rbm11 rbm11 PABPC3 PABPC3 PNPT1 PNPT1 fmr1 fmr1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102694475RNA binding motif, single stranded interacting protein 2a. (415 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
dazap1DAZ associated protein 1. (440 aa)
rbms3RNA binding motif, single stranded interacting protein. (292 aa)
W5M4V9_LEPOCAtaxin 1a. (839 aa)
LOC102691565AXH domain-containing protein. (577 aa)
mcrs1Microspherule protein 1. (469 aa)
msi2Musashi RNA-binding protein 2b. (387 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1009 aa)
W5ML68_LEPOCPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
ssbSmall RNA binding exonuclease protection factor La. (428 aa)
W5MQ16_LEPOCZgc:110796. (155 aa)
rbms1RNA binding motif, single stranded interacting protein 1a. (395 aa)
rbm11RRM domain-containing protein. (254 aa)
PABPC3Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (640 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (796 aa)
fmr1Fragile X mental retardation 1. (614 aa)
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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