(10 nodes) Lipoprotein particle receptor activity network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5NGH4_LEPOC	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family. (485 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (532 aa)
	W5M194_LEPOC	CUB domain-containing protein. (176 aa)
	W5M1B1_LEPOC	Uncharacterized protein. (266 aa)
	W5MHK8_LEPOC	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor. (936 aa)
	LDLR	Low density lipoprotein receptor. (859 aa)
	W5MT13_LEPOC	Low density lipoprotein receptor-related protein 12. (853 aa)
	stab1	Stabilin 1. (2571 aa)
	vldlr	Very low density lipoprotein receptor. (879 aa)
	W5NCW4_LEPOC	Stabilin 2. (2525 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LDLR	scarb1	ENSLOCP00000009478	ENSLOCP00000002033	Low density lipoprotein receptor.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.410
W5M194_LEPOC	W5M1B1_LEPOC	ENSLOCP00000002151	ENSLOCP00000002168	CUB domain-containing protein.	Uncharacterized protein.	0.934
W5M1B1_LEPOC	W5M194_LEPOC	ENSLOCP00000002168	ENSLOCP00000002151	Uncharacterized protein.	CUB domain-containing protein.	0.934
W5MHK8_LEPOC	scarb1	ENSLOCP00000007867	ENSLOCP00000002033	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.410
scarb1	LDLR	ENSLOCP00000002033	ENSLOCP00000009478	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Low density lipoprotein receptor.	0.410
scarb1	W5MHK8_LEPOC	ENSLOCP00000002033	ENSLOCP00000007867	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.	0.410
scarb1	vldlr	ENSLOCP00000002033	ENSLOCP00000015408	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Very low density lipoprotein receptor.	0.410
vldlr	scarb1	ENSLOCP00000015408	ENSLOCP00000002033	Very low density lipoprotein receptor.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.410