(6 nodes) pICln-Sm protein complex network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpf	Small nuclear ribonucleoprotein polypeptide F. (86 aa)
	clns1a	Chloride channel, nucleotide-sensitive, 1A. (244 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (117 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
clns1a	snrpd1	ENSLOCP00000007871	ENSLOCP00000002311	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.995
clns1a	snrpd2	ENSLOCP00000007871	ENSLOCP00000018254	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D2.	0.965
clns1a	snrpd3	ENSLOCP00000007871	ENSLOCP00000008455	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D3.	0.980
clns1a	snrpe	ENSLOCP00000007871	ENSLOCP00000014664	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.964
clns1a	snrpf	ENSLOCP00000007871	ENSLOCP00000019379	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein polypeptide F.	0.935
snrpd1	clns1a	ENSLOCP00000002311	ENSLOCP00000007871	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Chloride channel, nucleotide-sensitive, 1A.	0.995
snrpd1	snrpd2	ENSLOCP00000002311	ENSLOCP00000018254	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
snrpd1	snrpd3	ENSLOCP00000002311	ENSLOCP00000008455	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
snrpd1	snrpe	ENSLOCP00000002311	ENSLOCP00000014664	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
snrpd1	snrpf	ENSLOCP00000002311	ENSLOCP00000019379	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein polypeptide F.	0.999
snrpd2	clns1a	ENSLOCP00000018254	ENSLOCP00000007871	Small nuclear ribonucleoprotein Sm D2.	Chloride channel, nucleotide-sensitive, 1A.	0.965
snrpd2	snrpd1	ENSLOCP00000018254	ENSLOCP00000002311	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
snrpd2	snrpd3	ENSLOCP00000018254	ENSLOCP00000008455	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
snrpd2	snrpe	ENSLOCP00000018254	ENSLOCP00000014664	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
snrpd2	snrpf	ENSLOCP00000018254	ENSLOCP00000019379	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
snrpd3	clns1a	ENSLOCP00000008455	ENSLOCP00000007871	Small nuclear ribonucleoprotein Sm D3.	Chloride channel, nucleotide-sensitive, 1A.	0.980
snrpd3	snrpd1	ENSLOCP00000008455	ENSLOCP00000002311	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
snrpd3	snrpd2	ENSLOCP00000008455	ENSLOCP00000018254	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2.	0.999
snrpd3	snrpe	ENSLOCP00000008455	ENSLOCP00000014664	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
snrpd3	snrpf	ENSLOCP00000008455	ENSLOCP00000019379	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein polypeptide F.	0.999