(18 nodes) Early endosome to late endosome transport network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5M6X1_LEPOC	WD repeat domain 91. (744 aa)
	atg14	Autophagy related 14. (685 aa)
	ptpn23	Protein tyrosine phosphatase, non-receptor type 23, a. (1929 aa)
	wdr81	WD repeat domain 81. (2071 aa)
	fam160a2	Family with sequence similarity 160 member A2. (1082 aa)
	aktip	Akt interacting protein. (291 aa)
	hook2	Hook microtubule-tethering protein 2. (727 aa)
	hook1	Hook microtubule-tethering protein 1. (719 aa)
	pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (860 aa)
	snx16	Sorting nexin 16. (348 aa)
	becn1	Beclin 1, autophagy related. (449 aa)
	W5N6V2_LEPOC	Syntaxin 8. (185 aa)
	rab7a	RAB7A, member RAS oncogene family. (208 aa)
	LOC102697663	Zgc:100918. (206 aa)
	kif16b	Kinesin family member 16Ba; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1351 aa)
	ankrd27	Ankyrin repeat domain 27 (VPS9 domain). (1088 aa)
	pik3r4	Phosphoinositide-3-kinase, regulatory subunit 4. (1377 aa)
	HOOK3	Hook microtubule tethering protein 3. (742 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOOK3	aktip	ENSLOCP00000003859	ENSLOCP00000008697	Hook microtubule tethering protein 3.	Akt interacting protein.	0.838
HOOK3	fam160a2	ENSLOCP00000003859	ENSLOCP00000007893	Hook microtubule tethering protein 3.	Family with sequence similarity 160 member A2.	0.651
HOOK3	hook2	ENSLOCP00000003859	ENSLOCP00000009632	Hook microtubule tethering protein 3.	Hook microtubule-tethering protein 2.	0.609
W5M6X1_LEPOC	becn1	ENSLOCP00000004129	ENSLOCP00000013979	WD repeat domain 91.	Beclin 1, autophagy related.	0.502
W5M6X1_LEPOC	wdr81	ENSLOCP00000004129	ENSLOCP00000007650	WD repeat domain 91.	WD repeat domain 81.	0.971
W5N6V2_LEPOC	kif16b	ENSLOCP00000016361	ENSLOCP00000019688	Syntaxin 8.	Kinesin family member 16Ba; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.449
W5N6V2_LEPOC	snx16	ENSLOCP00000016361	ENSLOCP00000012630	Syntaxin 8.	Sorting nexin 16.	0.449
aktip	HOOK3	ENSLOCP00000008697	ENSLOCP00000003859	Akt interacting protein.	Hook microtubule tethering protein 3.	0.838
aktip	fam160a2	ENSLOCP00000008697	ENSLOCP00000007893	Akt interacting protein.	Family with sequence similarity 160 member A2.	0.819
aktip	hook1	ENSLOCP00000008697	ENSLOCP00000010916	Akt interacting protein.	Hook microtubule-tethering protein 1.	0.838
aktip	hook2	ENSLOCP00000008697	ENSLOCP00000009632	Akt interacting protein.	Hook microtubule-tethering protein 2.	0.911
atg14	becn1	ENSLOCP00000014438	ENSLOCP00000013979	Autophagy related 14.	Beclin 1, autophagy related.	0.999
atg14	pik3c3	ENSLOCP00000014438	ENSLOCP00000011478	Autophagy related 14.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
atg14	pik3r4	ENSLOCP00000014438	ENSLOCP00000001871	Autophagy related 14.	Phosphoinositide-3-kinase, regulatory subunit 4.	0.999
atg14	wdr81	ENSLOCP00000014438	ENSLOCP00000007650	Autophagy related 14.	WD repeat domain 81.	0.562
becn1	W5M6X1_LEPOC	ENSLOCP00000013979	ENSLOCP00000004129	Beclin 1, autophagy related.	WD repeat domain 91.	0.502
becn1	atg14	ENSLOCP00000013979	ENSLOCP00000014438	Beclin 1, autophagy related.	Autophagy related 14.	0.999
becn1	pik3c3	ENSLOCP00000013979	ENSLOCP00000011478	Beclin 1, autophagy related.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
becn1	pik3r4	ENSLOCP00000013979	ENSLOCP00000001871	Beclin 1, autophagy related.	Phosphoinositide-3-kinase, regulatory subunit 4.	0.999
becn1	wdr81	ENSLOCP00000013979	ENSLOCP00000007650	Beclin 1, autophagy related.	WD repeat domain 81.	0.892