15 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ppt1	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile). (304 aa)
	ldlrap1	Low density lipoprotein receptor adaptor protein 1a. (313 aa)
	cd63	Tetraspanin. (245 aa)
	vtn	Vitronectin a. (485 aa)
	tbc1d5	TBC1 domain family, member 5. (828 aa)
	clu	Clusterin; Belongs to the clusterin family. (468 aa)
	ahi1	Abelson helper integration site 1. (1275 aa)
	W5NGG6_LEPOC	Membrane associated guanylate kinase, WW and PDZ domain containing 2a. (1307 aa)
	vegfa	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family. (253 aa)
	fmr1	Fragile X mental retardation 1. (614 aa)
	SCYL2	SCY1 like pseudokinase 2. (721 aa)
	serpine1	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family. (391 aa)
	W5N014_LEPOC	Si:ch211-204c21.1. (773 aa)
	W5MYL6_LEPOC	Clusterin; Belongs to the clusterin family. (470 aa)
	pcsk9	Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family. (668 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5MYL6_LEPOC	W5N014_LEPOC	ENSLOCP00000013475	ENSLOCP00000013973	Clusterin; Belongs to the clusterin family.	Si:ch211-204c21.1.	0.407
W5MYL6_LEPOC	vtn	ENSLOCP00000013475	ENSLOCP00000006549	Clusterin; Belongs to the clusterin family.	Vitronectin a.	0.562
W5N014_LEPOC	W5MYL6_LEPOC	ENSLOCP00000013973	ENSLOCP00000013475	Si:ch211-204c21.1.	Clusterin; Belongs to the clusterin family.	0.407
W5N014_LEPOC	clu	ENSLOCP00000013973	ENSLOCP00000020727	Si:ch211-204c21.1.	Clusterin; Belongs to the clusterin family.	0.407
W5N014_LEPOC	ldlrap1	ENSLOCP00000013973	ENSLOCP00000003100	Si:ch211-204c21.1.	Low density lipoprotein receptor adaptor protein 1a.	0.883
cd63	vegfa	ENSLOCP00000005285	ENSLOCP00000019712	Tetraspanin.	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	0.410
clu	W5N014_LEPOC	ENSLOCP00000020727	ENSLOCP00000013973	Clusterin; Belongs to the clusterin family.	Si:ch211-204c21.1.	0.407
ldlrap1	W5N014_LEPOC	ENSLOCP00000003100	ENSLOCP00000013973	Low density lipoprotein receptor adaptor protein 1a.	Si:ch211-204c21.1.	0.883
ldlrap1	pcsk9	ENSLOCP00000003100	ENSLOCP00000010636	Low density lipoprotein receptor adaptor protein 1a.	Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.	0.461
pcsk9	ldlrap1	ENSLOCP00000010636	ENSLOCP00000003100	Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.	Low density lipoprotein receptor adaptor protein 1a.	0.461
serpine1	vtn	ENSLOCP00000017319	ENSLOCP00000006549	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	Vitronectin a.	0.990
vegfa	cd63	ENSLOCP00000019712	ENSLOCP00000005285	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	Tetraspanin.	0.410
vegfa	vtn	ENSLOCP00000019712	ENSLOCP00000006549	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	Vitronectin a.	0.489
vtn	W5MYL6_LEPOC	ENSLOCP00000006549	ENSLOCP00000013475	Vitronectin a.	Clusterin; Belongs to the clusterin family.	0.562
vtn	serpine1	ENSLOCP00000006549	ENSLOCP00000017319	Vitronectin a.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	0.990
vtn	vegfa	ENSLOCP00000006549	ENSLOCP00000019712	Vitronectin a.	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	0.489