40 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cask	Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family. (929 aa)
	W5M225_LEPOC	Glucose-6-phosphate isomerase; Belongs to the GPI family. (560 aa)
	W5M2S9_LEPOC	Synaptosome associated protein 29. (198 aa)
	arl6	ADP-ribosylation factor-like 6; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	W5MWM9_LEPOC	Tetratricopeptide repeat domain 8. (477 aa)
	arl13b	ADP-ribosylation factor-like 13b. (435 aa)
	septin2	Septin 2; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (372 aa)
	pkd2l1	Polycystic kidney disease 2-like 1. (845 aa)
	PDE6G	Phosphodiesterase 6G. (87 aa)
	LOC102685321	Prominin 2. (838 aa)
	pde6g	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b. (87 aa)
	LOC102698023	Melanin-concentrating hormone receptor 1a. (360 aa)
	W5N700_LEPOC	Uncharacterized protein. (2231 aa)
	W5NCP5_LEPOC	Bardet-Biedl syndrome 4. (480 aa)
	prom2	Uncharacterized protein. (832 aa)
	adcy3	Adenylate cyclase type 3; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1142 aa)
	smo	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (821 aa)
	bbs9	Bardet-Biedl syndrome 9. (960 aa)
	LOC102692454	Dopamine receptor D7; Belongs to the G-protein coupled receptor 1 family. (438 aa)
	drd5	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (456 aa)
	W5MH33_LEPOC	Uncharacterized protein. (82 aa)
	W5MJM7_LEPOC	G protein-coupled receptor 157. (173 aa)
	tmem17	Transmembrane protein 17. (153 aa)
	bbs2	Bardet-Biedl syndrome 2 protein homolog. (717 aa)
	MCHR1	Melanin concentrating hormone receptor 1. (354 aa)
	bbs5	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family. (342 aa)
	mosmo	Modulator of smoothened b. (167 aa)
	gpr161	Si:ch211-237c6.4; Belongs to the G-protein coupled receptor 1 family. (538 aa)
	tspear	Thrombospondin-type laminin G domain and EAR repeats b. (652 aa)
	EVC2	EvC ciliary complex subunit 2. (1224 aa)
	EVC	EvC ciliary complex subunit 1. (991 aa)
	tmem67	Transmembrane protein 67. (1038 aa)
	txndc15	Thioredoxin domain containing 15. (352 aa)
	W5LXJ9_LEPOC	Uncharacterized protein. (969 aa)
	iqce	IQ motif containing E. (766 aa)
	W5MD73_LEPOC	Uncharacterized protein. (1812 aa)
	LOC102690768	Zgc:112294. (194 aa)
	bbs7	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (718 aa)
	mxra8	Matrix-remodelling associated 8b. (426 aa)
	W5M3R4_LEPOC	Bardet-Biedl syndrome 1. (507 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EVC	EVC2	ENSLOCP00000012304	ENSLOCP00000012289	EvC ciliary complex subunit 1.	EvC ciliary complex subunit 2.	0.976
EVC	iqce	ENSLOCP00000012304	ENSLOCP00000001699	EvC ciliary complex subunit 1.	IQ motif containing E.	0.506
EVC	smo	ENSLOCP00000012304	ENSLOCP00000019665	EvC ciliary complex subunit 1.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.920
EVC2	EVC	ENSLOCP00000012289	ENSLOCP00000012304	EvC ciliary complex subunit 2.	EvC ciliary complex subunit 1.	0.976
EVC2	gpr161	ENSLOCP00000012289	ENSLOCP00000010474	EvC ciliary complex subunit 2.	Si:ch211-237c6.4; Belongs to the G-protein coupled receptor 1 family.	0.563
EVC2	iqce	ENSLOCP00000012289	ENSLOCP00000001699	EvC ciliary complex subunit 2.	IQ motif containing E.	0.721
EVC2	smo	ENSLOCP00000012289	ENSLOCP00000019665	EvC ciliary complex subunit 2.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.919
LOC102690768	tmem67	ENSLOCP00000004376	ENSLOCP00000012404	Zgc:112294.	Transmembrane protein 67.	0.405
LOC102698023	W5M3R4_LEPOC	ENSLOCP00000016396	ENSLOCP00000003022	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 1.	0.648
LOC102698023	W5MWM9_LEPOC	ENSLOCP00000016396	ENSLOCP00000012788	Melanin-concentrating hormone receptor 1a.	Tetratricopeptide repeat domain 8.	0.514
LOC102698023	W5NCP5_LEPOC	ENSLOCP00000016396	ENSLOCP00000018404	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 4.	0.609
LOC102698023	bbs2	ENSLOCP00000016396	ENSLOCP00000009574	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 2 protein homolog.	0.626
LOC102698023	bbs5	ENSLOCP00000016396	ENSLOCP00000009778	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.480
LOC102698023	bbs7	ENSLOCP00000016396	ENSLOCP00000003489	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.586
LOC102698023	bbs9	ENSLOCP00000016396	ENSLOCP00000003012	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 9.	0.543
LOC102698023	smo	ENSLOCP00000016396	ENSLOCP00000019665	Melanin-concentrating hormone receptor 1a.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.546
MCHR1	W5M3R4_LEPOC	ENSLOCP00000009754	ENSLOCP00000003022	Melanin concentrating hormone receptor 1.	Bardet-Biedl syndrome 1.	0.648
MCHR1	W5MWM9_LEPOC	ENSLOCP00000009754	ENSLOCP00000012788	Melanin concentrating hormone receptor 1.	Tetratricopeptide repeat domain 8.	0.514
MCHR1	W5NCP5_LEPOC	ENSLOCP00000009754	ENSLOCP00000018404	Melanin concentrating hormone receptor 1.	Bardet-Biedl syndrome 4.	0.609
MCHR1	bbs2	ENSLOCP00000009754	ENSLOCP00000009574	Melanin concentrating hormone receptor 1.	Bardet-Biedl syndrome 2 protein homolog.	0.626