(14 nodes) U2-type prespliceosome network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102686698	Small nuclear ribonucleoprotein-associated protein. (238 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1317 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	W5MEK7_LEPOC	PRP40 pre-mRNA processing factor 40 homolog A. (935 aa)
	sf3a2	Splicing factor 3a, subunit 2. (310 aa)
	luc7l	LUC7-like (S. cerevisiae). (373 aa)
	LOC102692451	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (349 aa)
	sf3a1	Splicing factor 3a, subunit 1. (791 aa)
	W5MV15_LEPOC	Uncharacterized protein. (84 aa)
	u2af2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (486 aa)
	luc7l3	LUC7-like 3 pre-mRNA splicing factor. (456 aa)
	W5MZR6_LEPOC	PRP39 pre-mRNA processing factor 39 homolog (yeast). (668 aa)
	LOC102689485	Uncharacterized protein. (317 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102686698	LOC102689485	ENSLOCP00000003155	ENSLOCP00000014690	Small nuclear ribonucleoprotein-associated protein.	Uncharacterized protein.	0.910
LOC102686698	LOC102692451	ENSLOCP00000003155	ENSLOCP00000009781	Small nuclear ribonucleoprotein-associated protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.630
LOC102686698	W5MEK7_LEPOC	ENSLOCP00000003155	ENSLOCP00000006816	Small nuclear ribonucleoprotein-associated protein.	PRP40 pre-mRNA processing factor 40 homolog A.	0.588
LOC102686698	W5MV15_LEPOC	ENSLOCP00000003155	ENSLOCP00000012224	Small nuclear ribonucleoprotein-associated protein.	Uncharacterized protein.	0.989
LOC102686698	W5MZR6_LEPOC	ENSLOCP00000003155	ENSLOCP00000013875	Small nuclear ribonucleoprotein-associated protein.	PRP39 pre-mRNA processing factor 39 homolog (yeast).	0.944
LOC102686698	lsm7	ENSLOCP00000003155	ENSLOCP00000005203	Small nuclear ribonucleoprotein-associated protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.985
LOC102686698	luc7l	ENSLOCP00000003155	ENSLOCP00000009564	Small nuclear ribonucleoprotein-associated protein.	LUC7-like (S. cerevisiae).	0.910
LOC102686698	luc7l3	ENSLOCP00000003155	ENSLOCP00000013439	Small nuclear ribonucleoprotein-associated protein.	LUC7-like 3 pre-mRNA splicing factor.	0.910
LOC102686698	sf3a1	ENSLOCP00000003155	ENSLOCP00000010014	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3a, subunit 1.	0.987
LOC102686698	sf3a2	ENSLOCP00000003155	ENSLOCP00000007045	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3a, subunit 2.	0.984
LOC102686698	sf3b1	ENSLOCP00000003155	ENSLOCP00000004663	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3b, subunit 1.	0.989
LOC102686698	snrpg	ENSLOCP00000003155	ENSLOCP00000019280	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein G.	0.997
LOC102686698	u2af2	ENSLOCP00000003155	ENSLOCP00000013289	Small nuclear ribonucleoprotein-associated protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.669
LOC102689485	LOC102686698	ENSLOCP00000014690	ENSLOCP00000003155	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.910
LOC102689485	LOC102692451	ENSLOCP00000014690	ENSLOCP00000009781	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.844
LOC102689485	W5MEK7_LEPOC	ENSLOCP00000014690	ENSLOCP00000006816	Uncharacterized protein.	PRP40 pre-mRNA processing factor 40 homolog A.	0.794
LOC102689485	W5MV15_LEPOC	ENSLOCP00000014690	ENSLOCP00000012224	Uncharacterized protein.	Uncharacterized protein.	0.966
LOC102689485	W5MZR6_LEPOC	ENSLOCP00000014690	ENSLOCP00000013875	Uncharacterized protein.	PRP39 pre-mRNA processing factor 39 homolog (yeast).	0.948
LOC102689485	lsm7	ENSLOCP00000014690	ENSLOCP00000005203	Uncharacterized protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.589
LOC102689485	luc7l	ENSLOCP00000014690	ENSLOCP00000009564	Uncharacterized protein.	LUC7-like (S. cerevisiae).	0.551