(9 nodes) Phagosome-lysosome fusion network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5M8B5_LEPOC	Phosphoinositide kinase, FYVE finger containing. (1977 aa)
	W5N9M4_LEPOC	SPG11 vesicle trafficking associated, spatacsin. (2385 aa)
	RAB7B	RAB7B, member RAS oncogene family. (200 aa)
	rab20	RAB20, member RAS oncogene family. (239 aa)
	W5MJN2_LEPOC	Transmembrane protein 175. (505 aa)
	rab39a	Uncharacterized protein. (213 aa)
	rab7a	RAB7A, member RAS oncogene family. (208 aa)
	W5LX71_LEPOC	Uncharacterized protein. (115 aa)
	LOC102697663	Zgc:100918. (206 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102697663	RAB7B	ENSLOCP00000019177	ENSLOCP00000015662	Zgc:100918.	RAB7B, member RAS oncogene family.	0.802
LOC102697663	rab39a	ENSLOCP00000019177	ENSLOCP00000008155	Zgc:100918.	Uncharacterized protein.	0.516
RAB7B	LOC102697663	ENSLOCP00000015662	ENSLOCP00000019177	RAB7B, member RAS oncogene family.	Zgc:100918.	0.802
RAB7B	rab20	ENSLOCP00000015662	ENSLOCP00000010998	RAB7B, member RAS oncogene family.	RAB20, member RAS oncogene family.	0.656
RAB7B	rab7a	ENSLOCP00000015662	ENSLOCP00000017903	RAB7B, member RAS oncogene family.	RAB7A, member RAS oncogene family.	0.802
rab20	RAB7B	ENSLOCP00000010998	ENSLOCP00000015662	RAB20, member RAS oncogene family.	RAB7B, member RAS oncogene family.	0.656
rab39a	LOC102697663	ENSLOCP00000008155	ENSLOCP00000019177	Uncharacterized protein.	Zgc:100918.	0.516
rab39a	rab7a	ENSLOCP00000008155	ENSLOCP00000017903	Uncharacterized protein.	RAB7A, member RAS oncogene family.	0.512
rab7a	RAB7B	ENSLOCP00000017903	ENSLOCP00000015662	RAB7A, member RAS oncogene family.	RAB7B, member RAS oncogene family.	0.802
rab7a	rab39a	ENSLOCP00000017903	ENSLOCP00000008155	RAB7A, member RAS oncogene family.	Uncharacterized protein.	0.512