(24 nodes) Cell-cell contact zone network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (780 aa)
	LOC102696549	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (378 aa)
	W5NFI2_LEPOC	Afadin, adherens junction formation factor a. (1922 aa)
	W5NDN5_LEPOC	Uncharacterized protein. (844 aa)
	rangrf	RAN guanine nucleotide release factor. (192 aa)
	dsp	Desmoplakin a. (2631 aa)
	fermt2	Fermitin family member 2. (696 aa)
	W5N2K8_LEPOC	Fibroblast growth factor receptor like 1b. (377 aa)
	W5N0C2_LEPOC	BAI1-associated protein 2-like 2a. (422 aa)
	W5MYE9_LEPOC	Fibroblast growth factor receptor like 1a. (483 aa)
	lims1	LIM domain-containing protein. (387 aa)
	W5MRZ5_LEPOC	Uncharacterized protein. (2105 aa)
	tmem26	Transmembrane protein 26a. (311 aa)
	cdh2	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins. (911 aa)
	LOC102691449	Uncharacterized protein. (303 aa)
	LOC107075524	Uncharacterized protein. (291 aa)
	W5MFW2_LEPOC	Adherens junctions associated protein 1. (423 aa)
	jam3	Junctional adhesion molecule 3a. (302 aa)
	W5MAJ3_LEPOC	CXADR Ig-like cell adhesion molecule. (375 aa)
	W5MAG4_LEPOC	Uncharacterized protein. (171 aa)
	W5MAE7_LEPOC	Vinculin a. (1122 aa)
	W5M9T0_LEPOC	Cell adhesion molecule 4. (365 aa)
	W5M7Z1_LEPOC	FXYD domain-containing ion transport regulator; Belongs to the FXYD family. (90 aa)
	LOC107076311	Uncharacterized protein. (111 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102696549	W5NDN5_LEPOC	ENSLOCP00000021983	ENSLOCP00000018744	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Uncharacterized protein.	0.536
LOC102696549	cdh2	ENSLOCP00000021983	ENSLOCP00000007557	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	0.610
LOC102696549	ctnnb1	ENSLOCP00000021983	ENSLOCP00000001573	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Catenin (cadherin-associated protein), beta 1.	0.693
W5MAE7_LEPOC	W5MAG4_LEPOC	ENSLOCP00000005356	ENSLOCP00000005373	Vinculin a.	Uncharacterized protein.	0.407
W5MAE7_LEPOC	W5NDN5_LEPOC	ENSLOCP00000005356	ENSLOCP00000018744	Vinculin a.	Uncharacterized protein.	0.524
W5MAE7_LEPOC	W5NFI2_LEPOC	ENSLOCP00000005356	ENSLOCP00000019391	Vinculin a.	Afadin, adherens junction formation factor a.	0.784
W5MAE7_LEPOC	cdh2	ENSLOCP00000005356	ENSLOCP00000007557	Vinculin a.	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	0.487
W5MAE7_LEPOC	ctnnb1	ENSLOCP00000005356	ENSLOCP00000001573	Vinculin a.	Catenin (cadherin-associated protein), beta 1.	0.802
W5MAE7_LEPOC	fermt2	ENSLOCP00000005356	ENSLOCP00000014953	Vinculin a.	Fermitin family member 2.	0.480
W5MAE7_LEPOC	lims1	ENSLOCP00000005356	ENSLOCP00000012704	Vinculin a.	LIM domain-containing protein.	0.449
W5MAG4_LEPOC	W5MAE7_LEPOC	ENSLOCP00000005373	ENSLOCP00000005356	Uncharacterized protein.	Vinculin a.	0.407
W5MAG4_LEPOC	W5NDN5_LEPOC	ENSLOCP00000005373	ENSLOCP00000018744	Uncharacterized protein.	Uncharacterized protein.	0.524
W5MAG4_LEPOC	W5NFI2_LEPOC	ENSLOCP00000005373	ENSLOCP00000019391	Uncharacterized protein.	Afadin, adherens junction formation factor a.	0.784
W5MAG4_LEPOC	cdh2	ENSLOCP00000005373	ENSLOCP00000007557	Uncharacterized protein.	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	0.487
W5MAG4_LEPOC	ctnnb1	ENSLOCP00000005373	ENSLOCP00000001573	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.802
W5MAG4_LEPOC	fermt2	ENSLOCP00000005373	ENSLOCP00000014953	Uncharacterized protein.	Fermitin family member 2.	0.480
W5MAG4_LEPOC	lims1	ENSLOCP00000005373	ENSLOCP00000012704	Uncharacterized protein.	LIM domain-containing protein.	0.449
W5NDN5_LEPOC	LOC102696549	ENSLOCP00000018744	ENSLOCP00000021983	Uncharacterized protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.536
W5NDN5_LEPOC	W5MAE7_LEPOC	ENSLOCP00000018744	ENSLOCP00000005356	Uncharacterized protein.	Vinculin a.	0.524
W5NDN5_LEPOC	W5MAG4_LEPOC	ENSLOCP00000018744	ENSLOCP00000005373	Uncharacterized protein.	Uncharacterized protein.	0.524