(10 nodes) Mucus layer network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5MIS8_LEPOC	Uncharacterized protein. (2698 aa)
	W5MIU5_LEPOC	Uncharacterized protein. (966 aa)
	W5MIZ5_LEPOC	Uncharacterized protein. (1263 aa)
	W5MIW8_LEPOC	Uncharacterized protein. (792 aa)
	W5LVB0_LEPOC	Uncharacterized protein. (435 aa)
	LOC102690169	Uncharacterized protein. (398 aa)
	LOC107078024	Uncharacterized protein. (682 aa)
	W5LVC2_LEPOC	Uncharacterized protein. (277 aa)
	W5NGT4_LEPOC	Uncharacterized protein. (874 aa)
	LOC102690310	Uncharacterized protein. (1208 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102690310	W5LVB0_LEPOC	ENSLOCP00000000116	ENSLOCP00000000067	Uncharacterized protein.	Uncharacterized protein.	0.680
LOC107078024	W5LVB0_LEPOC	ENSLOCP00000019847	ENSLOCP00000000067	Uncharacterized protein.	Uncharacterized protein.	0.690
LOC107078024	W5MIU5_LEPOC	ENSLOCP00000019847	ENSLOCP00000008304	Uncharacterized protein.	Uncharacterized protein.	0.712
LOC107078024	W5MIW8_LEPOC	ENSLOCP00000019847	ENSLOCP00000008327	Uncharacterized protein.	Uncharacterized protein.	0.837
W5LVB0_LEPOC	LOC102690310	ENSLOCP00000000067	ENSLOCP00000000116	Uncharacterized protein.	Uncharacterized protein.	0.680
W5LVB0_LEPOC	LOC107078024	ENSLOCP00000000067	ENSLOCP00000019847	Uncharacterized protein.	Uncharacterized protein.	0.690
W5LVB0_LEPOC	W5MIZ5_LEPOC	ENSLOCP00000000067	ENSLOCP00000008354	Uncharacterized protein.	Uncharacterized protein.	0.484
W5LVB0_LEPOC	W5NGT4_LEPOC	ENSLOCP00000000067	ENSLOCP00000019843	Uncharacterized protein.	Uncharacterized protein.	0.742
W5MIU5_LEPOC	LOC107078024	ENSLOCP00000008304	ENSLOCP00000019847	Uncharacterized protein.	Uncharacterized protein.	0.712
W5MIU5_LEPOC	W5NGT4_LEPOC	ENSLOCP00000008304	ENSLOCP00000019843	Uncharacterized protein.	Uncharacterized protein.	0.772
W5MIW8_LEPOC	LOC107078024	ENSLOCP00000008327	ENSLOCP00000019847	Uncharacterized protein.	Uncharacterized protein.	0.837
W5MIW8_LEPOC	W5NGT4_LEPOC	ENSLOCP00000008327	ENSLOCP00000019843	Uncharacterized protein.	Uncharacterized protein.	0.875
W5MIZ5_LEPOC	W5LVB0_LEPOC	ENSLOCP00000008354	ENSLOCP00000000067	Uncharacterized protein.	Uncharacterized protein.	0.484
W5NGT4_LEPOC	W5LVB0_LEPOC	ENSLOCP00000019843	ENSLOCP00000000067	Uncharacterized protein.	Uncharacterized protein.	0.742
W5NGT4_LEPOC	W5MIU5_LEPOC	ENSLOCP00000019843	ENSLOCP00000008304	Uncharacterized protein.	Uncharacterized protein.	0.772
W5NGT4_LEPOC	W5MIW8_LEPOC	ENSLOCP00000019843	ENSLOCP00000008327	Uncharacterized protein.	Uncharacterized protein.	0.875