54 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vwf	Von Willebrand factor. (2840 aa)
	W5LVB0_LEPOC	Uncharacterized protein. (435 aa)
	LOC102690310	Uncharacterized protein. (1208 aa)
	LOC107076473	VWFD domain-containing protein. (550 aa)
	LOC102697526	Uncharacterized protein. (806 aa)
	W5M111_LEPOC	Tectorin alpha. (2151 aa)
	ccn5	Uncharacterized protein. (349 aa)
	W5M269_LEPOC	Otogelin. (2820 aa)
	chrdl2	Chordin-like 2. (488 aa)
	LOC107079849	Cellular communication network factor 1, like 2. (376 aa)
	W5M3M0_LEPOC	BMP binding endothelial regulator. (644 aa)
	W5M406_LEPOC	Zgc:113531. (224 aa)
	W5M6Z1_LEPOC	Uncharacterized protein. (1936 aa)
	LOC102688746	Uncharacterized protein. (5300 aa)
	W5M863_LEPOC	Uncharacterized protein. (956 aa)
	W5MAF2_LEPOC	Von Willebrand factor C domain containing 2 like. (229 aa)
	dgcr2	DiGeorge syndrome critical region gene 2. (544 aa)
	NELL1	Neural EGFL like 1. (811 aa)
	vwc2	Von Willebrand factor C domain containing 2. (317 aa)
	col2a1	Collagen, type II, alpha 1b. (1492 aa)
	ccn1	Cellular communication network factor 1. (377 aa)
	LOC102690103	Uncharacterized protein. (2001 aa)
	W5MEX7_LEPOC	Uncharacterized protein. (1662 aa)
	PXDNL	Peroxidasin like. (1493 aa)
	LOC102697758	Uncharacterized protein. (1465 aa)
	col5a2	Collagen, type V, alpha 2a. (1502 aa)
	W5MIS8_LEPOC	Uncharacterized protein. (2698 aa)
	W5MIU5_LEPOC	Uncharacterized protein. (966 aa)
	W5MIW8_LEPOC	Uncharacterized protein. (792 aa)
	W5MIZ5_LEPOC	Uncharacterized protein. (1263 aa)
	W5MKH3_LEPOC	Cellular communication network factor 4a. (325 aa)
	W5MKP6_LEPOC	Fraser extracellular matrix complex subunit 1. (4004 aa)
	sspo	Subcommissural organ spondin. (5892 aa)
	chrd	Chordin; Belongs to the chordin family. (967 aa)
	CCN3	Cellular communication network factor 3. (351 aa)
	W5MTD8_LEPOC	Uncharacterized protein. (721 aa)
	W5MWB8_LEPOC	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1244 aa)
	W5N420_LEPOC	Thrombospondin 1b. (1174 aa)
	W5N4L8_LEPOC	Uncharacterized protein. (939 aa)
	W5N613_LEPOC	Zonadhesin, like. (2209 aa)
	CHRDL1	Chordin like 1. (459 aa)
	W5NKX8_LEPOC	Peroxidasin. (1498 aa)
	ECM2	Extracellular matrix protein 2. (746 aa)
	LOC102686187	Si:dkey-32e6.6. (661 aa)
	kcp	Si:dkey-266m15.6. (2323 aa)
	W5NG31_LEPOC	Uncharacterized protein. (250 aa)
	JAG1	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1218 aa)
	W5NGT4_LEPOC	Uncharacterized protein. (874 aa)
	W5NGT6_LEPOC	Uncharacterized protein. (233 aa)
	LOC107078024	Uncharacterized protein. (682 aa)
	thbs2	Thrombospondin 2a. (1195 aa)
	W5NHK3_LEPOC	Otogelin-like. (2789 aa)
	nell2	Neural EGFL like 2a. (814 aa)
	ccn2	Cellular communication network factor 2a. (353 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHRDL1	W5MKP6_LEPOC	ENSLOCP00000017035	ENSLOCP00000008955	Chordin like 1.	Fraser extracellular matrix complex subunit 1.	0.460
ECM2	W5MKP6_LEPOC	ENSLOCP00000017076	ENSLOCP00000008955	Extracellular matrix protein 2.	Fraser extracellular matrix complex subunit 1.	0.407
JAG1	W5MKP6_LEPOC	ENSLOCP00000019657	ENSLOCP00000008955	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Fraser extracellular matrix complex subunit 1.	0.460
LOC102686187	W5MKP6_LEPOC	ENSLOCP00000019102	ENSLOCP00000008955	Si:dkey-32e6.6.	Fraser extracellular matrix complex subunit 1.	0.407
LOC102688746	W5MKP6_LEPOC	ENSLOCP00000004386	ENSLOCP00000008955	Uncharacterized protein.	Fraser extracellular matrix complex subunit 1.	0.596
LOC102690103	W5M6Z1_LEPOC	ENSLOCP00000006721	ENSLOCP00000004149	Uncharacterized protein.	Uncharacterized protein.	0.484
LOC102690103	W5MKP6_LEPOC	ENSLOCP00000006721	ENSLOCP00000008955	Uncharacterized protein.	Fraser extracellular matrix complex subunit 1.	0.596
LOC102690310	W5LVB0_LEPOC	ENSLOCP00000000116	ENSLOCP00000000067	Uncharacterized protein.	Uncharacterized protein.	0.680
LOC102690310	W5MKP6_LEPOC	ENSLOCP00000000116	ENSLOCP00000008955	Uncharacterized protein.	Fraser extracellular matrix complex subunit 1.	0.460
LOC102690310	W5NGT6_LEPOC	ENSLOCP00000000116	ENSLOCP00000019845	Uncharacterized protein.	Uncharacterized protein.	0.516
LOC102697526	W5MKP6_LEPOC	ENSLOCP00000000565	ENSLOCP00000008955	Uncharacterized protein.	Fraser extracellular matrix complex subunit 1.	0.614
LOC107076473	W5MKP6_LEPOC	ENSLOCP00000000339	ENSLOCP00000008955	VWFD domain-containing protein.	Fraser extracellular matrix complex subunit 1.	0.596
LOC107078024	W5LVB0_LEPOC	ENSLOCP00000019847	ENSLOCP00000000067	Uncharacterized protein.	Uncharacterized protein.	0.690
LOC107078024	W5MIU5_LEPOC	ENSLOCP00000019847	ENSLOCP00000008304	Uncharacterized protein.	Uncharacterized protein.	0.712
LOC107078024	W5MIW8_LEPOC	ENSLOCP00000019847	ENSLOCP00000008327	Uncharacterized protein.	Uncharacterized protein.	0.837
LOC107078024	W5MKP6_LEPOC	ENSLOCP00000019847	ENSLOCP00000008955	Uncharacterized protein.	Fraser extracellular matrix complex subunit 1.	0.596
NELL1	W5MKP6_LEPOC	ENSLOCP00000005998	ENSLOCP00000008955	Neural EGFL like 1.	Fraser extracellular matrix complex subunit 1.	0.460
W5LVB0_LEPOC	LOC102690310	ENSLOCP00000000067	ENSLOCP00000000116	Uncharacterized protein.	Uncharacterized protein.	0.680
W5LVB0_LEPOC	LOC107078024	ENSLOCP00000000067	ENSLOCP00000019847	Uncharacterized protein.	Uncharacterized protein.	0.690
W5LVB0_LEPOC	W5MIZ5_LEPOC	ENSLOCP00000000067	ENSLOCP00000008354	Uncharacterized protein.	Uncharacterized protein.	0.484