(20 nodes) PAS fold network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5MFV0_LEPOC	PAS domain containing serine/threonine kinase. (1166 aa)
	NPAS3	Neuronal PAS domain protein 3. (955 aa)
	W5M843_LEPOC	Uncharacterized protein. (354 aa)
	sim1	SIM bHLH transcription factor 1a. (772 aa)
	epas1	Endothelial PAS domain protein 1b. (852 aa)
	ncoa1	Nuclear receptor coactivator 1. (1413 aa)
	W5NDN1_LEPOC	Aryl hydrocarbon receptor nuclear translocator-like 2. (639 aa)
	npas1	Neuronal PAS domain protein 1. (709 aa)
	pasd1	Neuronal PAS domain protein 2. (886 aa)
	W5NAL6_LEPOC	Hypoxia inducible factor 1 subunit alpha, like. (630 aa)
	ahrr	Aryl-hydrocarbon receptor repressor b. (666 aa)
	LOC102688707	Phosphodiesterase. (822 aa)
	arnt2	Aryl-hydrocarbon receptor nuclear translocator 2. (749 aa)
	W5MZZ3_LEPOC	Aryl hydrocarbon receptor 1a. (856 aa)
	HIF1A	Hypoxia inducible factor 1 subunit alpha. (419 aa)
	W5MVA2_LEPOC	Aryl hydrocarbon receptor 2. (941 aa)
	ncoa3	Nuclear receptor coactivator. (1492 aa)
	arntl	Aryl hydrocarbon receptor nuclear translocator-like 1a. (678 aa)
	ncoa2	Nuclear receptor coactivator. (1511 aa)
	SIM2	SIM bHLH transcription factor 2. (749 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HIF1A	W5NAL6_LEPOC	ENSLOCP00000012421	ENSLOCP00000017675	Hypoxia inducible factor 1 subunit alpha.	Hypoxia inducible factor 1 subunit alpha, like.	0.788
HIF1A	W5NDN1_LEPOC	ENSLOCP00000012421	ENSLOCP00000018740	Hypoxia inducible factor 1 subunit alpha.	Aryl hydrocarbon receptor nuclear translocator-like 2.	0.617
HIF1A	arnt2	ENSLOCP00000012421	ENSLOCP00000015736	Hypoxia inducible factor 1 subunit alpha.	Aryl-hydrocarbon receptor nuclear translocator 2.	0.889
HIF1A	arntl	ENSLOCP00000012421	ENSLOCP00000004790	Hypoxia inducible factor 1 subunit alpha.	Aryl hydrocarbon receptor nuclear translocator-like 1a.	0.617
HIF1A	epas1	ENSLOCP00000012421	ENSLOCP00000020188	Hypoxia inducible factor 1 subunit alpha.	Endothelial PAS domain protein 1b.	0.552
HIF1A	ncoa1	ENSLOCP00000012421	ENSLOCP00000019570	Hypoxia inducible factor 1 subunit alpha.	Nuclear receptor coactivator 1.	0.617
HIF1A	ncoa2	ENSLOCP00000012421	ENSLOCP00000004912	Hypoxia inducible factor 1 subunit alpha.	Nuclear receptor coactivator.	0.617
HIF1A	ncoa3	ENSLOCP00000012421	ENSLOCP00000004775	Hypoxia inducible factor 1 subunit alpha.	Nuclear receptor coactivator.	0.617
HIF1A	pasd1	ENSLOCP00000012421	ENSLOCP00000018179	Hypoxia inducible factor 1 subunit alpha.	Neuronal PAS domain protein 2.	0.620
NPAS3	W5NDN1_LEPOC	ENSLOCP00000011632	ENSLOCP00000018740	Neuronal PAS domain protein 3.	Aryl hydrocarbon receptor nuclear translocator-like 2.	0.617
NPAS3	arnt2	ENSLOCP00000011632	ENSLOCP00000015736	Neuronal PAS domain protein 3.	Aryl-hydrocarbon receptor nuclear translocator 2.	0.889
NPAS3	arntl	ENSLOCP00000011632	ENSLOCP00000004790	Neuronal PAS domain protein 3.	Aryl hydrocarbon receptor nuclear translocator-like 1a.	0.617
NPAS3	ncoa1	ENSLOCP00000011632	ENSLOCP00000019570	Neuronal PAS domain protein 3.	Nuclear receptor coactivator 1.	0.617
NPAS3	ncoa2	ENSLOCP00000011632	ENSLOCP00000004912	Neuronal PAS domain protein 3.	Nuclear receptor coactivator.	0.617
NPAS3	ncoa3	ENSLOCP00000011632	ENSLOCP00000004775	Neuronal PAS domain protein 3.	Nuclear receptor coactivator.	0.617
NPAS3	pasd1	ENSLOCP00000011632	ENSLOCP00000018179	Neuronal PAS domain protein 3.	Neuronal PAS domain protein 2.	0.643
SIM2	W5NDN1_LEPOC	ENSLOCP00000006091	ENSLOCP00000018740	SIM bHLH transcription factor 2.	Aryl hydrocarbon receptor nuclear translocator-like 2.	0.586
SIM2	arnt2	ENSLOCP00000006091	ENSLOCP00000015736	SIM bHLH transcription factor 2.	Aryl-hydrocarbon receptor nuclear translocator 2.	0.835
SIM2	arntl	ENSLOCP00000006091	ENSLOCP00000004790	SIM bHLH transcription factor 2.	Aryl hydrocarbon receptor nuclear translocator-like 1a.	0.586
SIM2	ncoa1	ENSLOCP00000006091	ENSLOCP00000019570	SIM bHLH transcription factor 2.	Nuclear receptor coactivator 1.	0.584